Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  188 bits (477), Expect = 5e-52
 Identities = 119/337 (35%), Positives = 182/337 (54%), Gaps = 20/337 (5%)

Query: 263 TPLHSKQHRTRALTPASDLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKAL 322
           T LH  +          D+      + R      ++   D  +LILG++G GK  F +AL
Sbjct: 119 TALHLMRRELEGQRTVEDIVTRSHAMTRLLDLLPQIAASDAPVLILGESGTGKELFARAL 178

Query: 323 HKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDE 382
           H  S R   P V VNCGAL + L+E+ELFGY AGAFT A  +   G+   A  G +FLDE
Sbjct: 179 HNLSPRAAKPFVGVNCGALPENLLESELFGYKAGAFTDA-RRDKPGRFHTAGDGTIFLDE 237

Query: 383 IADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYR 442
           I D+PL  Q +LL VLQ+K   P+G+ +A     ++IAAT+++LE++  +G FR DLYYR
Sbjct: 238 IGDMPLPLQVKLLRVLQEKCFEPLGAVNAEPALARVIAATNRDLERMTAEGTFRTDLYYR 297

Query: 443 LSDLVVELPSFQQR-QDRQALIHH-IHRRYSDAGQQICG---DLMQRLLAYHWPGNLREL 497
           L+ +++ LP  ++R +D  ALI H + RR    G+ I G   D++  +L Y +PGN+REL
Sbjct: 298 LNVVLLRLPPLRERPEDVPALIDHCVRRRNLLTGKDIEGVSEDVLHLMLRYPFPGNVREL 357

Query: 498 DSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTAT-------------EDDQQKDIK 544
           D++I+ A ++  G G +   HLP +L      A P+               +D Q   ++
Sbjct: 358 DNIIEYAFILC-GHGFIQLEHLPEYLLHAGGIATPSLAPSRPQPRPAGEPGDDGQPATLE 416

Query: 545 STVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLK 581
           +    +++       G    T R L +S++T+ R L+
Sbjct: 417 AIKYRAVVDALARNNGRRMATCRELDISKDTLRRILQ 453