Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  187 bits (474), Expect = 1e-51
 Identities = 109/294 (37%), Positives = 171/294 (58%), Gaps = 13/294 (4%)

Query: 305 LLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHK 364
           +LI+G++G GK    +ALH  S R   PLV VNC AL   L+E+ELFGYV GAFTGA  K
Sbjct: 166 VLIMGESGTGKELIAQALHDASTRARQPLVKVNCAALPGHLLESELFGYVRGAFTGAV-K 224

Query: 365 GYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHK 424
              G+ +LA  G LFLDEI +LPL+ Q++LL VLQ++ V P+G      VD++IIAAT++
Sbjct: 225 DKPGRFQLARGGTLFLDEIGELPLELQAKLLRVLQERVVEPLGGVRPVSVDVRIIAATNR 284

Query: 425 NLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDR-----QALIHHIHRRYSDAGQQICG 479
           +L + V +G FR+DLY+RL+ L V  P  ++R +      + L+  + R+   + + I  
Sbjct: 285 DLRREVAKGTFREDLYFRLNVLEVVSPPLRKRMEDLPQLVEELLGKLCRKNRKSIRCISA 344

Query: 480 DLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHL------AQKLSHAAPT 533
           D  + L  + WPGN+REL+++++ A +++  +  L+ + LP  L         +    P 
Sbjct: 345 DFFEALSRHSWPGNVRELENVLERALILSRTDS-LSADALPPQLFGDEPQVADMQQERPV 403

Query: 534 ATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGILK 587
             +D +   +    +  LL+      G+  +T+  LG+SR T+  KLK  G+ +
Sbjct: 404 VDDDSRPCSLDEAEKGELLRALDVHGGHREKTADALGISRRTLQYKLKKFGLTR 457