Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., Fis family transcriptional regulator from Burkholderia phytofirmans PsJN

 Score =  261 bits (666), Expect = 8e-74
 Identities = 201/646 (31%), Positives = 310/646 (47%), Gaps = 86/646 (13%)

Query: 13  LVNSWQRS-EQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           LV+SWQRS EQ  L   +      LS  +L+E + +    +   S   L   + +   +D
Sbjct: 30  LVSSWQRSFEQYRLDPGAVIGPRVLSSAELREVQGKEEAFL-RASGQCLSRLHDMIRVAD 88

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
             ++LTD HGV I        R       L  G+CW E  +GT  +   L +  PI V  
Sbjct: 89  YCVMLTDAHGVTIDYRIDRDRRSDFKHAGLYIGSCWSEREEGTCGVANVLTDLAPIIVHK 148

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQ-----LVEN 186
             HF      ++CSA+PIF  TG++IGVLD ++ Q      +Q +V  +V+     + + 
Sbjct: 149 TDHFRAAFTTLTCSAAPIFAPTGEMIGVLDASAVQSPDNRDSQRLVFQLVRQSAGLIEDG 208

Query: 187 QLLNQ-----IPHGHV-RIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLA---- 236
             LNQ     +  GH  R  +  +P +L       I  DE G ++A N+ A + +     
Sbjct: 209 YFLNQTSQHWVLFGHSSRNFVEAQPEVL-------IAFDECGNLVAANRKARECIPALNG 261

Query: 237 ---------------------------QGRVIGQSVEQVLPRPQTHASFIYTTTPLHSKQ 269
                                      + R  G ++   +  P    S   +T  L+   
Sbjct: 262 PRHIDDVFDTSGSHLHDIARTDAIVGLRLRATGTTLYARIRAPLRRISRAAST--LNEGA 319

Query: 270 HRTRALTPASDLHFG---------DAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVK 320
            R+      +DLH G         +  +      A RV+ K + +LILG+TGVGK  F  
Sbjct: 320 ARSSQSASQNDLHLGALGRFLHSAEPRIAHNAAVALRVMGKRLPILILGETGVGKEVFAH 379

Query: 321 ALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFL 380
           A+H +  R+  P +AVNCGA+ + L+E+ELFGY  GAFTGA  +G +GK+  A  G LFL
Sbjct: 380 AVHDSGARRARPFIAVNCGAIPESLIESELFGYAPGAFTGARSRGARGKIAQAHTGTLFL 439

Query: 381 DEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLY 440
           DEI D+PLD Q+RLL VL +  V P+G++   +VDI +I ATH++L Q+V  G FR+DLY
Sbjct: 440 DEIGDMPLDLQTRLLRVLAEGEVTPLGADAPVRVDIDVICATHRDLTQMVAAGTFREDLY 499

Query: 441 YRLSDLVVELPSFQQRQDRQALIHHIHRRYSD-AGQQICGD--LMQRLLAYHWPGNLREL 497
           YRLS   + +P  ++R D + +I  +    +  AG  +  D  L +RL  + WPGN+R+L
Sbjct: 500 YRLSGASLPIPPLRERADIRDVIEAVFDEEAQMAGHVLTLDPQLAERLAGFAWPGNIRQL 559

Query: 498 DSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTAT----------EDDQQKDIKST- 546
            ++++ A  + +   V    H+   +A  L   AP A            D +Q+D     
Sbjct: 560 RNVLRYACAICDSARV-ELRHVAPDMAALL---APEAVHKPALLRIDPHDGRQRDALQAP 615

Query: 547 ------VEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGIL 586
                   A ++      Q   +  ++ LG+SR T+YR++ +LGI+
Sbjct: 616 RQDPREERARIIDALTRHQWRPNAAAQALGMSRATLYRRIASLGIV 661