Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 663 a.a., Fis family transcriptional regulator from Burkholderia phytofirmans PsJN

 Score =  322 bits (826), Expect = 2e-92
 Identities = 218/647 (33%), Positives = 335/647 (51%), Gaps = 90/647 (13%)

Query: 19  RSEQAGLTQQSRAQDI----RLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAH---SD 71
           RS + GL + S A D     R +  +L ER Q L          ALP+   L A    + 
Sbjct: 23  RSLEIGL-RASEAPDFHPLPRPALRELVERNQSLF-------THALPVMETLHAQIVDTQ 74

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
           S ++LTD HGVI+ S G + F EK +++AL  G  W E  +GTNAIGTAL++ +P  V  
Sbjct: 75  SMVLLTDNHGVILHSLGDSDFVEKANRVALCPGVSWAEADRGTNAIGTALVDGQPTVVHA 134

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQ 191
            +HF+  +  ++CS +PI D  G+ IG LD++ + +     T  +V+   Q++EN L + 
Sbjct: 135 GEHFLHANRILTCSCAPIADPFGRTIGALDVSGDTRGFHKHTLALVRMSAQMIENHLFSN 194

Query: 192 IPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVA----GQLLAQ---------- 237
                +R+        + + ++G+      G  L+ N+ A    GQ LA+          
Sbjct: 195 QFADAIRVHFHARGEFIGTLFEGLAAFAPDGTFLSANRSALFQFGQALAELQRQPFDALF 254

Query: 238 -----------GRVIGQSV--------------EQVLPRPQTHASFIYTTT--PLHSK-Q 269
                       R  G+++              E  LPR    +  +  T+  PL S  +
Sbjct: 255 GVPISRLLQQIARAPGENIQLTLPSGVRVVARGEYALPRYVAPSESLAGTSRAPLSSDAR 314

Query: 270 HRTRALTPA-----SDLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHK 324
           H  R   PA       L  GDA+V    ++  ++  +DI +L+LG+TG GK    +A+H 
Sbjct: 315 HAPRVADPAPPATLETLDTGDAQVAAILRRVAKLRGRDIPILVLGKTGTGKEWLARAIHH 374

Query: 325 NSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIA 384
           +S R++ P +A+NC +L + L+EAELFGY  GAFTGA  +G  GK+  AD G LFLDEI 
Sbjct: 375 DSPRRDAPFIALNCASLPETLIEAELFGYEDGAFTGAKKRGSVGKIVQADGGTLFLDEIG 434

Query: 385 DLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLS 444
           D+PL  Q RL+ VLQ++ V+P+G   A  VD++I+ ATH+NL  ++  G FR+DLYYR++
Sbjct: 435 DMPLAQQVRLMRVLQERNVVPLGGTRAIPVDLRIVCATHRNLRAMIEAGTFREDLYYRIN 494

Query: 445 DLVVELPSFQQRQDRQALIHHIHRRYSDAGQ----QICGDLMQRLLAYHWPGNLRELDSL 500
            LV+ LP+ ++R D +AL+  +      AG+    ++  D+++R     WPGNLR+L ++
Sbjct: 495 GLVLTLPALRERTDLRALVTRM-LELQPAGERLPRRVSADVLERFAQCRWPGNLRQLANV 553

Query: 501 IKVASLMAEGEGVLTFNHLPTHLAQKL--SHAAPTATEDDQQKDIKSTVE---------- 548
           ++ AS+MAEG   +  + LP    Q    + A P       + D  S  E          
Sbjct: 554 LRTASIMAEGAEQIELDDLPEDFLQDCIDTAAEPCVQSPAMRADSGSCDEVRAAAQTQGQ 613

Query: 549 --ASLLKTYQAT---------QGNISQTSRLLGLSRNTIYRKLKALG 584
              S ++ +QAT          GN+S  +R LGL+RNT+YR L+  G
Sbjct: 614 PATSKMEAWQATLIAQTLERLDGNVSAAARELGLARNTVYRYLRRGG 660