Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 549 a.a., ATPase AAA from Burkholderia phytofirmans PsJN

 Score =  206 bits (523), Expect = 3e-57
 Identities = 118/300 (39%), Positives = 179/300 (59%), Gaps = 12/300 (4%)

Query: 288 VERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVE 347
           + R  + A RV   D  +LI GQ+GVGK+     +H +S R  GP + +NCGAL  +L+E
Sbjct: 255 MRRVAELAMRVARVDATVLITGQSGVGKDVIASMIHGHSARSAGPFIKINCGALPHDLLE 314

Query: 348 AELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVG 407
           +ELFGY  GAFTGA   G  G V LA+KG LFLDEI D+PLD Q +LL +LQD+TV+ VG
Sbjct: 315 SELFGYEPGAFTGAQRTGKSGLVELANKGTLFLDEIGDMPLDLQVKLLQMLQDRTVVRVG 374

Query: 408 SNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHH-- 465
              A  VD+++IAAT+++L+ +V    FR DLYYRL+ + + +PS   R+D  A + H  
Sbjct: 375 GTRAAAVDVRVIAATNRDLKSMVEARTFRDDLYYRLNVIPIPIPSLADRKDDVAPMVHQF 434

Query: 466 ---IHRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTH 522
               + RY    + +    +  L+AY WPGN+REL ++++   +  E + V+    L   
Sbjct: 435 VGEFNERYG-CHRTMSEQTLALLIAYDWPGNVRELRNVVERLIVTCESD-VIDPEFLDGV 492

Query: 523 LAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKA 582
           L +++  A P +     ++  +  VE ++ +      GN    +RLLGLS++++ RKL+A
Sbjct: 493 LPREVLDAEPNSFRQRVERFERRLVEDAMRQV-----GNTRDAARLLGLSQSSVVRKLRA 547