Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  196 bits (499), Expect = 1e-54
 Identities = 121/351 (34%), Positives = 206/351 (58%), Gaps = 15/351 (4%)

Query: 243 QSVEQVLPRPQTHASFIYTTTPLHSKQHRTRALTPASDLHFGDAEVERCWQQANRVIDKD 302
           QS+ Q L + Q  +  + +    H  Q      T   D+    A +    QQ + V + D
Sbjct: 141 QSLRQALAQVQALSEQLASEN--HYLQAELADKTGDVDISGSSAVIRHMIQQLHMVANTD 198

Query: 303 IRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGAS 362
             +LI G+ G GK    + LH+ S+RK+ P+++VNC A +  L+E+ELFG+  GAFTGA+
Sbjct: 199 STVLICGENGTGKELVARNLHQLSRRKDKPMISVNCAAFSASLLESELFGHEKGAFTGAT 258

Query: 363 HKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAAT 422
            +  +G+  LA +G LFLDE+A+L L+AQS+LL V+Q+++   +G +   KVDI+++AA+
Sbjct: 259 QQR-KGRFELAHQGTLFLDEVAELSLEAQSKLLRVIQEQSFERLGGSETIKVDIRLVAAS 317

Query: 423 HKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR-QDRQALIHHI-HRRYSDAGQQICG- 479
           H +L + V QGLFR DLYYRL+   +++P  + R +D   L+ HI H      G+++ G 
Sbjct: 318 HHDLLKRVEQGLFRMDLYYRLNVFPIQVPPLRARLEDMPELVSHILHSLNRKLGKKLRGV 377

Query: 480 --DLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTAT-E 536
               +Q+L+AY WPGN+REL ++++  +++++ + +L  + +PTH  Q  + A+P  T  
Sbjct: 378 SQKGLQKLMAYSWPGNVRELQNILEREAILSQTD-ILQIHAMPTHHLQTQTAASPLQTLA 436

Query: 537 DDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGILK 587
           + + + I+ T     LK         +  + +LG+  +T+  ++K LGI +
Sbjct: 437 EAEAQHIEQT-----LKQLNWRISGPNGAANVLGVPPSTLRSRMKKLGITR 482