Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) from Shewanella sp. ANA-3

 Score =  192 bits (488), Expect = 3e-53
 Identities = 139/395 (35%), Positives = 217/395 (54%), Gaps = 37/395 (9%)

Query: 218 ADESGQILAHNQVAGQLLAQGRVIGQSVEQVLPRPQTHASFIYTTTPLHSKQHRTRALTP 277
           +D    + A+   A + L +   I +++  V  R  THA+     +P  + Q  T+  TP
Sbjct: 84  SDLDSAVSAYQAGAFEYLPKPFDIDEAISLV-ERALTHAT---EQSPAPAAQE-TQVKTP 138

Query: 278 ASDLHFGDAE-VERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAV 336
                 G+A  ++  ++   R+    I +LI GQ+G GK     ALHK+S RK+ P +A+
Sbjct: 139 EI---IGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAGALHKHSPRKDKPFIAL 195

Query: 337 NCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLH 396
           N  A+ K+L+E+ELFG+  GAFTGA++   QG+   A+ G LFLDEI D+PLD Q+RLL 
Sbjct: 196 NMAAIPKDLIESELFGHEKGAFTGAANVR-QGRFEQANGGTLFLDEIGDMPLDVQTRLLR 254

Query: 397 VLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR 456
           VL D     VG + A +VD++IIAATH++LEQLV +G FR+DL++RL+ + V LP   QR
Sbjct: 255 VLADGQFYRVGGHSAVQVDVRIIAATHQDLEQLVLKGGFREDLFHRLNVIRVHLPPLSQR 314

Query: 457 QD--RQALIHHIHRRYSDAGQQ---ICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGE 511
           ++   Q   H +     + G +   +  +   +L    WPGN+R+L++  +  ++MA G+
Sbjct: 315 REDIPQLATHFLASAAKEIGVEAKILTKETAAKLSQLPWPGNVRQLENTCRWLTVMASGQ 374

Query: 512 GVLTFNHLPTHLAQKLSHAAPTA----------TEDDQQK----------DIKSTVEASL 551
            +L    LP  L ++ +   P A          TE   QK          +++   E  L
Sbjct: 375 EILP-QDLPQELLKEPASINPMAKGSQDWQSALTEWIDQKLSEGNSDLLTEVQPAFERIL 433

Query: 552 LKT-YQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
           L+T  + TQG+  + ++ LG  RNT+ RKLK L +
Sbjct: 434 LETALRHTQGHKQEAAKRLGWGRNTLTRKLKELSM 468