Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., Fis family GAF modulated sigma54 specific transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  575 bits (1482), Expect = e-168
 Identities = 304/606 (50%), Positives = 409/606 (67%), Gaps = 33/606 (5%)

Query: 12  WLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           WL +SWQRS  AGL++    +D+RL+ ++LK + ++   LI+ V   ALPLF QL AHS+
Sbjct: 22  WLTDSWQRSLGAGLSEFRAGEDLRLTRSELKYKHEQYQQLIELVQSHALPLFNQLMAHSN 81

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
           SRL+L+D  G ++  WG +R+  KL+ +AL  G  W E  KGTNAIGTAL  ++ +SV+G
Sbjct: 82  SRLLLSDADGYVLKHWGVSRYSSKLADVALDIGVNWLEKYKGTNAIGTALTAKQAVSVVG 141

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQ 191
           EQHFI+ + F+SC+A PIF   G+++GVLDITSEQQ+H+  T ++V ++ Q VE  LL  
Sbjct: 142 EQHFIRQNRFMSCTACPIFSPQGEMLGVLDITSEQQRHSQQTLMLVSSLAQQVETALLCH 201

Query: 192 IPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGRVIGQSVEQVLPR 251
           +P  H RID A +PSLL+SGWQG++IA   G+I+  N +A QLL+Q + +G S++Q L  
Sbjct: 202 LPDSHYRIDFAAQPSLLNSGWQGIVIASSDGRIVGCNPMAKQLLSQAK-LGDSLDQHLGD 260

Query: 252 PQTHASFIYTTTPLH----------SKQHRTRALTPASDL--HFGDAEVERCWQQANRVI 299
               A   +  + LH          +K  RT    P + L   F D  +ER WQQAN+VI
Sbjct: 261 NWARAGGFHRDSALHVQTQALALTQTKSTRTLQDKPLNQLGVRFRDPLLERAWQQANKVI 320

Query: 300 DKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFT 359
            K I LL+LG+TGVGK +FVK LH  S R+  P+VAVNC AL  ELVE+ELFGY AGAFT
Sbjct: 321 TKQIPLLVLGETGVGKEQFVKKLHAQSTRRAQPIVAVNCAALPAELVESELFGYQAGAFT 380

Query: 360 GASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQII 419
           GA+  G+ GK+R A  G LFLDEI ++PL AQSRLL VLQ++ V+PVGSN + KVDIQII
Sbjct: 381 GANRTGFIGKIRQAHGGFLFLDEIGEMPLAAQSRLLRVLQEREVVPVGSNQSFKVDIQII 440

Query: 420 AATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHRRYSDAGQQICG 479
           AATH +LE LV QGLFRQDL+YRL+ L V LP+ ++RQD + +IH +HRR+  + Q +C 
Sbjct: 441 AATHMDLESLVAQGLFRQDLFYRLNGLQVRLPALRERQDIERIIHKLHRRHRSSAQTLCT 500

Query: 480 DLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAA---PTATE 536
           +L+ +L+ Y WPGNLRELD+L++VA LMAEGE VL  NHLP +LAQKL + A    T TE
Sbjct: 501 ELLAQLMRYDWPGNLRELDNLMQVACLMAEGEAVLEINHLPDYLAQKLMNLACEPQTLTE 560

Query: 537 DDQQK-----------------DIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRK 579
               +                  +  T+  ++L+ Y+A  GN+SQ ++ LG+SRN +YRK
Sbjct: 561 VADAEATAHPHELVESSSVTIDSLHGTINLNVLQAYRACDGNVSQCAKRLGISRNALYRK 620

Query: 580 LKALGI 585
           LK LGI
Sbjct: 621 LKQLGI 626