Pairwise Alignments

Query, 461 a.a., cryptochrome DASH from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., deoxyribodipyrimidine photo-lyase (RefSeq) from Shewanella amazonensis SB2B

 Score =  140 bits (354), Expect = 7e-38
 Identities = 136/450 (30%), Positives = 205/450 (45%), Gaps = 67/450 (14%)

Query: 7   LYWFTNDLRVNDNPLLEQASQQVD----RLICLYCYPSITPFLARYAQQTQW-----GEA 57
           L WF  DLR  DN  L +A +  +    ++  L+            A   QW     G  
Sbjct: 4   LVWFRQDLRTIDNQALTRACEDANARGGKVHALFI-----------ASPGQWQRHDMGVR 52

Query: 58  KKRFLNQTLADLDHSLSTLGQKLWVTPL-LPYQ---ALRHLLTQVEITDIYVDAVAGSDE 113
           ++RFL   L  L   L+++G  L +  +   YQ   AL+    +  I+ I+  A    DE
Sbjct: 53  QQRFLLANLNALGEELASMGIPLSLLKVDFFYQTAAALKAFCKEHGISSIFAGAQIEIDE 112

Query: 114 RQAIARIHQDFSSVHIHQQALHSLLSEPQLPFALE-----ALPSTFTQFRKQVETISLS- 167
           R+    +      + +  +  H +L    +    +     A+   FT F ++   I+ S 
Sbjct: 113 RRRDQALLDKGFPLQLTDE--HCMLPPGSVVTQGQRDQGGAMYRVFTPFARRWREIAASR 170

Query: 168 --------APMGYPHVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLP 219
                   A +  P V  P    W     DI  +P    +  G+ A L      F  L  
Sbjct: 171 SLWPIPAPASVATPVVFTPFAF-WG----DINDDPALDKWPVGQDAALEKLSR-FRELGM 224

Query: 220 SRYKETRNGLDGMDYSTKFSPWLALGAVSPKT-IYAMLQRYEAV--HGANDSTYWIFFEL 276
            RY E R+    +D ++  SP+LALG +SP+  + A+L+ +  V  + ++ +  W+  EL
Sbjct: 225 GRYGENRD-FPAIDGTSSLSPYLALGVISPRQCLAALLEDFPDVFVNESSPARPWLN-EL 282

Query: 277 LWREYFYWYARRYGAKLFRFSGIGEKK---PLTSFYAQR-----FLQWKHGETPFPIVNA 328
           +WRE+       Y   L  F G+   K   PL      R     F  WKHG T +P+V+A
Sbjct: 283 VWREF-------YRHLLVAFPGLSMAKNFNPLGDGIRWRNDETEFEAWKHGRTGYPLVDA 335

Query: 329 CMRQLNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGV 388
            MRQLNQTG+M NR R +VAS L   L +DWR+G  YF  QL+D  + +N G WQ+ AG 
Sbjct: 336 AMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFREQLIDGCLAANNGGWQWAAGT 395

Query: 389 GADPRG-SRQFNLEKQAHTYDPKGEFVAKW 417
           G D +   R FN   Q+  +DP+G F+ K+
Sbjct: 396 GCDAQPYFRIFNPMSQSEKFDPEGRFIRKY 425