Pairwise Alignments

Query, 461 a.a., cryptochrome DASH from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., deoxyribodipyrimidine photo-lyase from Pseudomonas fluorescens SBW25-INTG

 Score =  102 bits (254), Expect = 3e-26
 Identities = 124/444 (27%), Positives = 187/444 (42%), Gaps = 57/444 (12%)

Query: 7   LYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQW-----GEAKKRF 61
           L W   DLR++DN  L  ASQ+   +  +Y    ITP         QW        K  F
Sbjct: 3   LIWLRTDLRLHDNTALAAASQR-GPIAAVYL---ITP--------EQWLAHDDAPCKVDF 50

Query: 62  LNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQAI 117
             + L  L  +L  L   L +     +    + L  L  ++ +  ++V+   G  E +  
Sbjct: 51  WLRNLHALSATLGELNIPLLIRTAATWDQAPRVLSQLCQELSVESVHVNEEYGIHESRRD 110

Query: 118 ARIHQDFSSVHIHQQALHSLLSEPQL-PFALEALPST----FTQFRKQVETISLSAPMGY 172
           A + +   +  +   + HS L +    P ++     T    F+QFRK   +   SA    
Sbjct: 111 AAVSKALEAQGV---SFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSA---L 164

Query: 173 PHVL--PPIEQGWQLPLMDIVT-----EPNHSAFVGGEQAGLTHCQ---NYFSSLLPSRY 222
           P ++  P  +    L    I T     EP   A      AG    +   + F+    S Y
Sbjct: 165 PRIVAAPKAQAALTLKSDPIPTTVEGFEPPSQALRALWPAGEDEARRRLDAFADQQISYY 224

Query: 223 KETRNGLDGMDYSTKFSPWLALGAVSPKT-IYAMLQRY--EAVHGANDSTYWIFFELLWR 279
           K+ R+       +++ S +LA G VSP+  ++A LQ    E   G   +  WI  ELLWR
Sbjct: 225 KDERD-FPAKPGTSQLSAYLAAGVVSPRQCLHAALQTNGGEFESGDMGAITWIN-ELLWR 282

Query: 280 EYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQR-----FLQWKHGETPFPIVNACMRQLN 334
           E++      Y     R S     +P T   A R        W+   T  PI++A MRQL 
Sbjct: 283 EFYKHILVGYP----RVSRHRAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLL 338

Query: 335 QTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG 394
           +TG+M NR R +VA  L   L +DWR G  +F   L+D D+ +N G WQ+ +  G D   
Sbjct: 339 ETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAP 398

Query: 395 -SRQFNLEKQAHTYDPKGEFVAKW 417
             R F+   Q+  +D  G F+  W
Sbjct: 399 YFRIFSPLSQSEKFDSDGVFIKHW 422