Pairwise Alignments

Query, 461 a.a., cryptochrome DASH from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., deoxyribodipyrimidine photo-lyase (RefSeq) from Shewanella loihica PV-4

 Score =  109 bits (272), Expect = 2e-28
 Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 6/184 (3%)

Query: 239 SPWLALGAVSPKTIYAML-QRY-EAVHGANDSTYWIFFELLWREYFYWYARRYGA--KLF 294
           SP+LA+GA+S + +   L QR+ E ++      +    EL+WR+++      Y    K  
Sbjct: 247 SPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKHLLFHYPELIKGG 306

Query: 295 RFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLVASCLVHE 354
            F    E  P  +  A  F  W  G T +PIV+A M+QL +TG+M NR R +VAS L   
Sbjct: 307 SFQPKYESLPWPNNEAH-FQAWCEGRTGYPIVDAAMKQLRRTGWMHNRLRMIVASFLTKH 365

Query: 355 LGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHTYDPKGEF 413
           L +DW  G  +F  QL+D D  +N G WQ+ A  G D +   R FN   Q+  +DP+GEF
Sbjct: 366 LLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQSQKFDPRGEF 425

Query: 414 VAKW 417
           + K+
Sbjct: 426 IRKY 429



 Score = 25.4 bits (54), Expect = 0.004
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 7  LYWFTNDLRVNDNPLLEQA 25
          L W   D R++DNP L +A
Sbjct: 4  LLWLRRDFRLHDNPALSEA 22