Pairwise Alignments

Query, 383 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., MSHA biogenesis protein MshM (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 65/273 (23%), Positives = 118/273 (43%), Gaps = 16/273 (5%)

Query: 110 MKHFKLFRNPFINDIRAVRDIYMNEDSRYVLAAMKDVARNQGILAVVGDSGAGKSVLRRL 169
           +KHF L + PF           ++     +      +   +G + V G+ G GK+++ R 
Sbjct: 3   LKHFGLGQAPFSLTPNTGFFFGLSPHVEALQVLQTALQTGEGFIKVTGEVGTGKTLICRK 62

Query: 170 LLDELHNDGDISVIQPKIIDKTRATAAGICDAIISDISSEAPKRSMEAKARQVERLLMTA 229
           L++EL      + +    +       A + + +    +SE  ++ +      +++ L+  
Sbjct: 63  LINELPQGFHCAYLPNPYLTPAELRWA-VANELGLKYTSEIDQQQLTGL---IQQQLLAL 118

Query: 230 FKGGQRHVLIIEEAHDLTIPVMKYLKRFWELEDGFSKLLGILLVGQTELFHRLDERRHYE 289
              G   VL+++EA  L    ++ L+ F  LE    KLL ++L GQ EL  RL  +   +
Sbjct: 119 STHGHAIVLVLDEAQALPDESLEALRLFTNLETESRKLLQVVLFGQPELDERLKRQAFRQ 178

Query: 290 LREFIRRCMVIEVPPLD-NDIEAYLKHKFERAGCEYERIMDDSAVPALKLRLQTRRNQSG 348
           LR+  R      + PL  ++ +AY++++   AG          A  AL     TR+    
Sbjct: 179 LRQ--RITFSYNLRPLTWDETDAYIRYRLAVAG---------HAGQALFSPKITRKIAQA 227

Query: 349 SLVYPQVINNLVTKAMNLCASLGEDKVNEDIIK 381
           S   P++IN L  KA+ L    G  +V    +K
Sbjct: 228 SRGIPRLINILAHKALMLSFGEGATQVRMSHLK 260