Pairwise Alignments

Query, 383 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., general secretion pathway protein a (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 68/252 (26%), Positives = 119/252 (47%), Gaps = 22/252 (8%)

Query: 130 IYMNEDSRYVLAAMK-DVARNQGILAVVGDSGAGKSVLRRLLLDELHNDGDISVIQPKII 188
           +++++  R  LA +   +    G + + G+ G GK+ + R LL +L ++ D + I    +
Sbjct: 22  LFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVSRCLLGQLPDNTDTAFILNPSL 81

Query: 189 DKTRATAAGICDAIISDISSEAPKRSMEAKARQVERLLMTAFKGGQRHVLIIEEAHDLTI 248
            +    A  +CD +     S     +++     + R L+   + G++ VLII+EA  L  
Sbjct: 82  TELELLAT-LCDELKI---SYGENPTLKQLTDHLSRFLLANHEKGRKTVLIIDEAQHLRA 137

Query: 249 PVMKYLKRFWELEDGFSKLLGILLVGQTELFHRLDERRHYELREFIRRCMV-IEVPPLDN 307
            V++ L+    LE    KLL ++L+GQ EL   L   +  ELR+  +R      + PL+ 
Sbjct: 138 EVLEQLRLLTNLETDTKKLLQVILIGQPELQLLL---KRQELRQLAQRITARYHLLPLNE 194

Query: 308 D-IEAYLKHKFERAGCEYERIMDDSAVPALKLRLQTRRNQSGSLVYPQVINNLVTKAMNL 366
           D I  Y+ H+ + AG  +E +    A+  L          SG +  P++IN L  +A  L
Sbjct: 195 DEITLYVLHRLQVAG-RFEPLFTRKAIKVL-------HKYSGGI--PRLINLLCERA--L 242

Query: 367 CASLGEDKVNED 378
            A   + KV  D
Sbjct: 243 MAGYAQSKVPID 254