Pairwise Alignments

Query, 346 a.a., phage tail tape measure protein from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  463 bits (1192), Expect = e-135
 Identities = 229/337 (67%), Positives = 275/337 (81%)

Query: 1   MANNLKTDIVLNLQGDLAQKARSYSKEMTTLATRSKAAFSMISSSAIAASRGIDTFGNRL 60
           M+  L TDIVLNL G+L++KA  Y  ++  L  +SK  F MISSSA AASRGIDTFGNR 
Sbjct: 1   MSKKLVTDIVLNLSGNLSEKAIRYGDQIKNLGEKSKVGFGMISSSAAAASRGIDTFGNRA 60

Query: 61  LFITGAAAVGFERTFVKTAAEFERYQTMLNKLQGSPEAGAKAMAWIEEFTQNTPYAIDEV 120
           +    A A+ FERTF+KTAAEFERYQ MLNKLQGS   G KAM WIE+FTQ TPY ++EV
Sbjct: 61  ILGVSAGAIAFERTFIKTAAEFERYQIMLNKLQGSEANGLKAMEWIEKFTQETPYGVNEV 120

Query: 121 TQSFVRLKAFGIDPMDGTMQSIADQAAMIGGTAETVEGIATALGQAWTKGKLQSEEALQL 180
             SF+RLKAFG+DPMDG++Q+IADQAAM+GGTAETV+GIA ALGQAWTKGKLQ EEALQL
Sbjct: 121 MNSFIRLKAFGLDPMDGSLQAIADQAAMMGGTAETVDGIALALGQAWTKGKLQGEEALQL 180

Query: 181 LERGVPVWDYLIKSSKELGMNNGRGFTKEELDDMSSKGKLGRDAIRALIKQMGKESAGAA 240
           LERGVPVWDYLIK+SK+LG NNG G+T  +L DM+SKG L RDAI++LIK+MG  S G++
Sbjct: 181 LERGVPVWDYLIKASKDLGKNNGVGYTAAQLQDMASKGLLTRDAIKSLIKEMGSASQGSS 240

Query: 241 KEQMNTWNGMISNMGDHWKLFQKDVMGSGAFTVLKDQLGEFLGMLDEMKKTGEYDEFVDK 300
           K+QM +WNGMISNMGD W +F+KDVM SGAFTVLK +LG  L  LDEMKKTGEYD+ V+K
Sbjct: 241 KKQMESWNGMISNMGDAWTIFKKDVMSSGAFTVLKTELGGVLKQLDEMKKTGEYDKLVEK 300

Query: 301 VGRDLVEAFKSAAAAAREIKEVGEELWPVIREIGSMA 337
           VG+DLVE FK+AA AAR +++VG +L P+++ IGS A
Sbjct: 301 VGKDLVEGFKTAAEAARGLRDVGRDLLPILKAIGSGA 337