Pairwise Alignments

Query, 346 a.a., phage tail tape measure protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1308 a.a., hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  195 bits (496), Expect = 5e-54
 Identities = 124/346 (35%), Positives = 177/346 (51%), Gaps = 41/346 (11%)

Query: 13  LQGDLAQKARSYSKEMTTLATRS------KAAFSMISSSAIAASRGIDTFGNRL------ 60
           +Q +LAQ++ S++K    L+           A   +SS      R +D F N+L      
Sbjct: 192 MQRELAQQSASHTKLQNALSKSGIDYNNLTTAQRKLSSEFDGTGRNVDKFANQLDKGNAS 251

Query: 61  --------------LFITGAAAVGFERT------FVKTAAEFERYQTMLNKLQGSPEAGA 100
                         +     A VGF+R          T  +FER    +N + G  E+G 
Sbjct: 252 ARDHAASLRGVITQVTALAGAYVGFDRVAQAVKDIFATGDQFERLGVQMNAVMGGFESGR 311

Query: 101 KAMAWIEEFTQNTPYAIDEVTQSFVRLKAFGIDPMDGTMQSIADQAAMIGGTAETVEGIA 160
           +A AW+++F  + P  ++EV Q+FV+ KAFG+DPM+GTM++I DQA  +GG  + VEGI 
Sbjct: 312 QATAWVKQFAIDVPLQLNEVNQAFVKAKAFGLDPMNGTMKAIVDQAFKLGGGFQEVEGIT 371

Query: 161 TALGQAWTKGKLQSEEALQLLERGVPVWDYLIKSSKELGMNNGRGFTKEELDDMSSKGKL 220
            ALGQAW K KLQ EE LQL+ERGVPVWD L K +         G    EL+ +SS+GKL
Sbjct: 372 LALGQAWAKQKLQGEEILQLIERGVPVWDMLAKVT---------GKNSLELEKLSSQGKL 422

Query: 221 GRDAIRALIKQMGKESAGAAKEQMNTWNGMISNMGDHWKLFQKDVMGSGAFTVLKDQLGE 280
           GRD I+ALI +MG+ S G+A  QM   +G +SN+ D+   F   V  SGA   LK Q+ E
Sbjct: 423 GRDVIQALIDEMGRASNGSAAAQMALLSGQVSNLKDNLTNFYDLVAQSGALDWLKGQISE 482

Query: 281 FLGMLDEMKKTGEYDEFVDKVGRDLVEAFKSAAAAAREIKEVGEEL 326
                  M   G   E+  ++   +V    +    A  +    +E+
Sbjct: 483 LNLEFAAMASDGRLREWAQQISDTIVSIGSAVQDGAAMLYHFRDEI 528