Pairwise Alignments

Query, 346 a.a., phage tail tape measure protein from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., conserved domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  117 bits (292), Expect = 8e-31
 Identities = 86/276 (31%), Positives = 132/276 (47%), Gaps = 39/276 (14%)

Query: 61  LFITGAAAV-----GFERTFVKTAAEFERYQTMLNKL-QGSPEAGAKAMAWIEEFTQNTP 114
           L  TG+AA       F+  FV TA++FER++T+L  L QG      K M WI +F   TP
Sbjct: 55  LAATGSAAALGLGYAFKTQFVDTASQFERFETILTTLNQGDTGKAKKEMGWISDFAAKTP 114

Query: 115 YAIDEVTQSFVRLKAFGIDPMDGTMQSIADQAAMIGGTAETVEGIATALGQAWTKGKLQS 174
           Y + +VT SFV+L+++G+DP  G ++++ D A  +G   + ++  A A+  A T    Q+
Sbjct: 115 YELAQVTDSFVKLRSYGLDPTKGLLRTVGDTAYAMG---KPLDQAAEAIADAMTG---QN 168

Query: 175 EEALQLLERGVPVWDYLIKSSKELGMNN---GRGFTKEELDDMSSKGKL-----GRDAIR 226
           E                    KE G+N    G     + +D  + + KL      R AI+
Sbjct: 169 ERL------------------KEFGINASKVGDKIVYDYVDATNKQAKLMVKANDRAAIQ 210

Query: 227 ALIKQMGKESAGAAKEQ-MNTWNGMISNMGDHWKLFQKDVMGSGAFTVLKDQLGEFLGML 285
           A I ++  E  G   E    T+ GM+SN+ D W  F + VM +G F  +K +L   L  +
Sbjct: 211 AAITKIWAEKYGGGMEAGSKTFGGMVSNLSDSWGNFTRMVMSNGVFDWMKGKLEGVLAKI 270

Query: 286 DEMKKTGEYDEFVDKVGRDLVEAFKSAAAAAREIKE 321
           DEM   G    +   +G  L   F +A  A  ++ E
Sbjct: 271 DEMSGDGRLQAWAKDIGEKLTRFFDAAWNALPKVWE 306