Pairwise Alignments

Query, 807 a.a., sialidase from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., sialidase (Neuraminidase) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 52.0 bits (123), Expect = 9e-11
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 45/223 (20%)

Query: 573 GPGHGITLTRQQNISGSQNGRLIYPAIVLDRFFL-NVMSIYSDDGGSNWQTGSTLPIPFR 631
           GPG GIT++         +G L++P   +D   + N   +YS D G  W+  +       
Sbjct: 348 GPGRGITMS---------DGTLVFPTQFIDSTRVPNAGIMYSKDRGKTWKMHN------- 391

Query: 632 WKSSSILETLEPSEADMVELQNGDLLLTARLDFNQIVNGVNYSPRQQFLSKDGGITWSLL 691
                 +     +EA +VE + G L+L  R +            R   ++KD G TW+  
Sbjct: 392 ------MARTNTTEAQVVETEPGVLMLNMRDNRG--------GSRAVAITKDLGKTWTEH 437

Query: 692 EANNANVFSNISTGTVDASITRFEQSDG---SHFLLFTNPQGNPAGTNGRQNLGLWFSFD 748
            ++   +   +      AS+   E  D       LLF+NP      T GR ++ +  S D
Sbjct: 438 PSSRKALQEPVCM----ASLIHVEAEDNVLDKDILLFSNPNT----TRGRNHITIKASLD 489

Query: 749 EGVTWKGPIQLV---NGASAYSDIYQLDSENAIVIVETDNSNM 788
           +G+TW    QL+        YS +  +D E   ++ E+  ++M
Sbjct: 490 DGLTWLPEHQLMLDEGEGWGYSCLTMIDRETIGILYESSAAHM 532



 Score = 32.3 bits (72), Expect = 7e-05
 Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 26/148 (17%)

Query: 256 ASSVTPGVVTAFAEKRVGGGDPGALSNTN-----DIITRTSRDGGITWDTELNLTEQINV 310
           AS   PG+VT+     +G  D    S+ +     D+    S DGG TW+ ++ L      
Sbjct: 201 ASFRIPGLVTSNKGTLLGVYDVRYNSSVDLQEYVDVGLSRSTDGGKTWE-KMRLPLSFGE 259

Query: 311 SD-----EFDFSDPRPIYDPSSNTVLVSYARWPTDAAQNGDRIKPWMPNGIFYSVYDVAS 365
            D     +    DP  + D  +NT+ V  A W           + W  +     +Y  A 
Sbjct: 260 YDGLPAAQNGVGDPSILVDTQTNTIWV-VAAWTHGMGNQ----RAWWSSHPGMDLYQTAQ 314

Query: 366 ----------GNWQAPIDVTDQVKERSF 383
                       W  PI++T+QVK+ S+
Sbjct: 315 LVMAKSTDDGKTWSKPINITEQVKDPSW 342