Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Pseudomonas fluorescens FW300-N2E2

 Score =  118 bits (296), Expect = 2e-31
 Identities = 89/328 (27%), Positives = 153/328 (46%), Gaps = 11/328 (3%)

Query: 1   MKTINKITIAILTLSAAASVNAATTLKMGMQASVG--SVEYNSAKMLADTLEEMSQGEIK 58
           +K I K  +  L LSA  +  AA  + +     VG  + +   A M     EE   G++K
Sbjct: 2   LKPIWKTLLCTLALSAGGNALAAEPIVIKFSHVVGEQTPKGQGALMFKKLAEERLPGKVK 61

Query: 59  LALYPSAQL-GDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRM 117
           + +YP++ L GDD+ M + L LG++ I      +   +    +   LP++  D   + R 
Sbjct: 62  VEVYPNSTLYGDDKEM-EALLLGEVQIIARSLAKFEQYTKSVQLFDLPFLFDDIPAVDRF 120

Query: 118 FESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNY 177
            +S  GQ +   M  K N   L  W+NG ++ ++N+PL + ED + L  R+  +      
Sbjct: 121 QQSPEGQKLLKSMESK-NITGLAYWHNGMKQLSANKPLRTPEDARDLTFRIQTSAVLEEQ 179

Query: 178 AKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVI 237
            K   A   PM FS VY  L+T  V+G EN        K  EVQK +  ++H + D M+I
Sbjct: 180 FKAVDAKAKPMIFSVVYQGLRTGLVNGTENTYSNFYNQKLNEVQKYVTESNHGILDYMLI 239

Query: 238 ISESTWQKL-----SDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDL 292
            +   W+ L     S+ DK +++       +A     + ++  ++    +E I +T    
Sbjct: 240 TTSDFWKGLPPDIRSELDKIVVESTAYANQEAERFNQQDKQ-HVLDAKTTEIITLTPEQR 298

Query: 293 EPFREAMQPLYKEFDSNIGQPIVSKLAA 320
             +RE M+P++ +F+  IG  ++    A
Sbjct: 299 NAWREKMKPVWAKFEQEIGPDLIKAAQA 326