Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Pseudomonas stutzeri RCH2

 Score =  139 bits (350), Expect = 9e-38
 Identities = 98/328 (29%), Positives = 160/328 (48%), Gaps = 13/328 (3%)

Query: 2   KTINKITIAILTLSAAASVNAAT--TLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKL 59
           K   K     L+LS A   +AA   T+K     +  + +   A M    +EE   G++++
Sbjct: 3   KLTAKALACALSLSIAGLAHAADPITIKFSHVVAENTPKGQGALMFKKLVEERLAGKVEV 62

Query: 60  ALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFE 119
            +YP++ L  D   ++ L LGD+ +      +   +    +   LP++  D   + R  +
Sbjct: 63  QVYPNSSLFGDGKEMEALLLGDVQLIAPSLAKFEHYSKGVQVYDLPFLFDDIAAVDRFQK 122

Query: 120 SDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNYAK 179
            + GQ +   M  K N   L  W+NG ++ ++N+PL   +D +GLK RV  +       K
Sbjct: 123 GEAGQSLLRSMEDK-NITGLGYWHNGMKQLSANKPLREPKDARGLKFRVQASAVLDEQFK 181

Query: 180 LSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIIS 239
              A+P  MSF+EVY  LQT  V+G ENP   I + K +EVQK +  ++H + D MVI +
Sbjct: 182 AVRANPRKMSFAEVYQGLQTGVVNGAENPYSNIYSQKMHEVQKYITESNHGLLDYMVITN 241

Query: 240 ESTWQKL-SDTDKDI------IQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDL 292
              W  L +D   ++      +  AV K  D   Q  K +   +V    +E IN+T    
Sbjct: 242 TKFWNGLPADVRSELESILNEVTVAVNKQADELNQADKQR---IVDAGTTEIINLTPEQR 298

Query: 293 EPFREAMQPLYKEFDSNIGQPIVSKLAA 320
           E +REAM+P++K+F+  IG  ++    A
Sbjct: 299 EMWREAMKPVWKKFEGEIGADLIKAAEA 326