Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Pseudomonas stutzeri RCH2

 Score =  119 bits (299), Expect = 8e-32
 Identities = 88/324 (27%), Positives = 151/324 (46%), Gaps = 14/324 (4%)

Query: 6   KITIAILTLSAAASVNA-ATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPS 64
           K     L+ S A  V+A   T+K     +  + +   A +     EE   G++K+ +YP+
Sbjct: 7   KALACALSFSIAGLVHADPVTIKFAHVVADNTPKGQGALLFKKLAEERLPGKVKVEVYPN 66

Query: 65  AQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQ 124
           + L  D   ++ L LGD+ +      +   +    +   LP++  D     R      G+
Sbjct: 67  SSLFGDGKEMEALLLGDVHMLAPSLAKFEHYAKAIQIYDLPFLFDDLAAADRFQSGPQGK 126

Query: 125 GVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNYAKLSGAS 184
            +   M  K N   L  W+NG ++ ++N+PL   +D +GLK RV  +       K   A+
Sbjct: 127 ALLRAMEDK-NITGLAYWHNGMKQLSANKPLREPKDARGLKFRVQASAVLDEQFKAVRAN 185

Query: 185 PTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISESTWQ 244
           P  MSF+EVY  LQT  V+G EN     ++ K +EVQ  +  + H + D MVI +   W 
Sbjct: 186 PRKMSFAEVYQGLQTGVVNGTENTWSNYESQKVHEVQPYMTASDHGLIDYMVITNTKFWN 245

Query: 245 KLSDTDKDIIQKAVQKVGDAHTQTVKTQEAEL--------VSFFKSEGINVTYPDLEPFR 296
            L +  +  ++  +++V    T  V  Q  +L         +  K+E I +T      +R
Sbjct: 246 GLPEDLRGELETIMEEV----TAEVNRQADDLNQQARQAIAASGKTEIIELTPEQRAQWR 301

Query: 297 EAMQPLYKEFDSNIGQPIVSKLAA 320
           EAM+P++K+F++ IG  ++    A
Sbjct: 302 EAMKPVWKKFENEIGAELIEAAQA 325