Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Pseudomonas stutzeri RCH2

 Score =  100 bits (249), Expect = 5e-26
 Identities = 77/320 (24%), Positives = 145/320 (45%), Gaps = 7/320 (2%)

Query: 1   MKTINKITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLA 60
           MK I  +   +L L++A +      +K     +  + +   A M     EE   G++++ 
Sbjct: 1   MKPIITLAGVLLALASACAQAEPIVIKFSHVVADDTPKGKGALMFKRLAEERLAGQVRVE 60

Query: 61  LYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFES 120
           +YP++ L  D   L+ L   ++ +      +   +  + +   LP++  D + + R  + 
Sbjct: 61  VYPNSTLFGDATELEALRNDEVQLLAPSLAKFEQYTKQLQVFDLPFLFDDIEAVNRFQKR 120

Query: 121 DFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRV-PNAKQNLNYAK 179
             G+ +   M  K N   L  W+NG ++ ++ R L    D  GL  R+ P+A     +  
Sbjct: 121 AKGKQLLRSMEDK-NITGLAYWHNGMKQLSATRMLRQPSDASGLSFRIQPSAVLEAQFGT 179

Query: 180 LSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIIS 239
           + GAS   + F++VY AL+   V G ENP   I + K + VQ  +  T H V D MV+ +
Sbjct: 180 V-GASTQKIPFADVYDALRAGTVQGAENPWSNIYSKKMHTVQPYIIETDHGVLDYMVVSN 238

Query: 240 ESTW----QKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPF 295
              W     K+    + I+ +    V     +  +     +     SE + ++  + E +
Sbjct: 239 TRFWMGMPHKIRFELEAILDEVSFMVNREADELNRADRERIRQAGTSEIVALSPEERERW 298

Query: 296 REAMQPLYKEFDSNIGQPIV 315
           REAM+P++++F+  IG  I+
Sbjct: 299 REAMRPVWQQFEPVIGADII 318