Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., D-gluconate TRAP transporter, periplasmic component (from data) from Pseudomonas stutzeri RCH2

 Score =  150 bits (380), Expect = 3e-41
 Identities = 103/333 (30%), Positives = 174/333 (52%), Gaps = 15/333 (4%)

Query: 1   MKTINKITIAILTLSAAASVNAATT--------LKMGMQASVGSVEYNSAKMLADTLEEM 52
           MK +   T+A   L +  S+  A          ++ G   +  S +  +AK+LA+ + + 
Sbjct: 1   MKRLLISTLAAALLGSTLSLGYAQAADDIRPRMIRFGYGLNEDSNQGRAAKLLAEEVAKA 60

Query: 53  SQGEIKLALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVM-LPYVAKDF 111
           S G++K+  + SA LG D  M   L  G  ++       + + I +  AV   P++  D 
Sbjct: 61  SGGKLKVRTFASASLGSDDQMQNALIGGAQEMMVGSTATL-VGISKEMAVWDTPFLFTDP 119

Query: 112 DHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSN-RPLNSIEDFKGLKLRVPN 170
               ++ +   G+ V D++ +K     L  W NG R  T++ RP+  +EDF G+KLRV  
Sbjct: 120 RQADQVLDGPVGRQVMDKLEEK-GLVGLVYWENGFRNVTNSARPIEKLEDFNGVKLRVMP 178

Query: 171 AKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHI 230
               ++  K  GA+  P+ FSE++ AL+T AVDGQENP  TI + KFYEVQK L++T+H+
Sbjct: 179 NPVFIDTFKRMGANAVPLPFSELFTALETKAVDGQENPFNTILSSKFYEVQKYLSVTNHV 238

Query: 231 VNDQMVIISESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEG--INVT 288
            +  +V +S+  W  LS T++ I+ +A +K  DA  +  + + ++ ++  K  G  IN  
Sbjct: 239 YSPWIVTVSKRWWDGLSATEQGILMEAAEKARDAEREDTRREASQALAALKERGMQINEV 298

Query: 289 YPD-LEPFREAMQPLYKEFDSNIGQPIVSKLAA 320
            PD ++  RE  QP  +     +GQ +  ++ A
Sbjct: 299 SPDEIQRMREKAQPAIQTVIDAVGQELFDQVQA 331