Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., TRAP-type periplasmic solute-binding protein from Sinorhizobium meliloti 1021

 Score =  114 bits (285), Expect = 3e-30
 Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 5/285 (1%)

Query: 40  NSAKMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRA 99
           N  K +   L++ S G++KL  +    LG D    Q L  G  +        +   IP  
Sbjct: 44  NGIKAMQACLDQKSGGKLKLTAFWGGALGGDLQATQALRSGVQEAVVTSSSPLVGIIPAL 103

Query: 100 EAVMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSN-RPLNSI 158
               LP++  +      + + DFG  + +E L+      L  W NG R  +++ RP+   
Sbjct: 104 GVFDLPFLFANAQEAYTVLDGDFGD-MMNEKLEAAGLVNLAYWENGFRNLSNSVRPVTKW 162

Query: 159 EDFKGLKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFY 218
           EDF+G+K+RV      L+  +  GA+ TPM+F EV+ AL+T A+D QENP  TI T KF+
Sbjct: 163 EDFEGMKVRVMQNNIFLDTFQNLGANATPMAFGEVFSALETKAIDAQENPYVTIDTSKFF 222

Query: 219 EVQKNLAMTHHIVNDQMVIISESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVS 278
           EVQK +  T+H     + + S+  +   +  ++  +++      D   + ++    + + 
Sbjct: 223 EVQKYVTETNHAYTPFLFLFSKPIFDSYTPEEQAALRECAVVGRDEERKVIQDLNKKSLE 282

Query: 279 FFKSEGINVTYPDLEP---FREAMQPLYKEFDSNIGQPIVSKLAA 320
             K  G+ V     E     RE    +Y++  + IG  +V  + A
Sbjct: 283 KIKEAGLEVNTLSAEEQARIREKSMVVYEKHKAEIGAEVVDAILA 327