Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., TRAP transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

 Score =  130 bits (326), Expect = 6e-35
 Identities = 87/317 (27%), Positives = 156/317 (49%), Gaps = 10/317 (3%)

Query: 8   TIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQL 67
           +IA+  L   A+  +   +K     +  + +  +A    +  E+ + G++K+ +YP++QL
Sbjct: 10  SIAVFGLVGPAAAQSPIVIKFSHVVAPNTPKGMAADKFKELAEKYTDGKVKVEVYPNSQL 69

Query: 68  GDDRAMLQQLTLGDLDI---TYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQ 124
             D+  L  L LG + +   + ++FG  G  +   E   LPY+  D   LR++     G 
Sbjct: 70  FKDKEELDALKLGAVQMLAPSISKFGPAG--VKEFEVFDLPYILPDIAALRKVTNGPVGA 127

Query: 125 GVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNYAKLSGAS 184
            +  ++L       L  W NG +  ++N+ L + ED+KGLK R+ ++K      +  GA 
Sbjct: 128 KLF-KLLDSKGMTGLAYWDNGFKIMSANKKLIAPEDYKGLKFRIQSSKVLDAQFRALGAI 186

Query: 185 PTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISESTWQ 244
           P  ++FSEVY ALQT  VDGQEN    + T K +EVQK   +T+H      VI+++  W 
Sbjct: 187 PQVLAFSEVYQALQTGVVDGQENTPSNMYTQKMHEVQKYTTVTNHGYIGYAVIVNKQFWD 246

Query: 245 KLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEG----INVTYPDLEPFREAMQ 300
            +    +  + KA+++  +      + + AE +   K  G    I +T       R+AM 
Sbjct: 247 GIPADVRAQLDKAMKEATEFGNSQSQKENAEALEEMKKSGKTEIITLTPEQNLAMRKAMA 306

Query: 301 PLYKEFDSNIGQPIVSK 317
           P+Y +    +G+ ++ +
Sbjct: 307 PVYDDVGGRVGKALIEE 323