Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data) from Phaeobacter inhibens DSM 17395

 Score =  122 bits (306), Expect = 1e-32
 Identities = 80/287 (27%), Positives = 145/287 (50%), Gaps = 10/287 (3%)

Query: 41  SAKMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAE 100
           +A +L   + E   G + L +YP++ L +D  +L+ +  GD+ +      +   +  +  
Sbjct: 47  AASLLEKRINEEMNGTMCLEVYPNSTLYNDNKVLEAMLQGDVQLAAPSLSKFEKFTKQFR 106

Query: 101 AVMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIED 160
              LP++ K+ D +     S+ GQ + D M Q+   + L  W+NG ++ ++N+PL +  D
Sbjct: 107 LFDLPFMFKNIDAVDAFQGSENGQAMLDSM-QRRGLQGLSYWHNGMKQMSANKPLINPSD 165

Query: 161 FKGLKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEV 220
             GLK RV ++   +   +  G SP  M+FSEVY ALQ   VDGQEN    I   KF+EV
Sbjct: 166 ANGLKFRVQSSDVLVAQMEAIGGSPQKMAFSEVYGALQQGVVDGQENTWSNIYGKKFFEV 225

Query: 221 QKNLAMTHHIVNDQMVIISESTWQKLSDTDKDIIQKAVQKVGDA----HTQTVKTQEAEL 276
           Q  +  T+H   D +V+ S   W  L   D  + ++ +  +G+     ++++ K      
Sbjct: 226 QDGVTETNHGALDYLVVTSVD-W--LDSLDPAVREQFLTILGEVTATRNSESTKVNAEAR 282

Query: 277 VSFFKSEGI--NVTYPDLEPFREAMQPLYKEFDSNIGQPIVSKLAAM 321
            S   + G+   +T      + EAM+P++++F  ++GQ ++    A+
Sbjct: 283 QSIIDAGGVVRELTPEQRAAWVEAMKPVWEQFAGDVGQDMIDAAQAI 329