Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data) from Shewanella loihica PV-4

 Score =  127 bits (318), Expect = 5e-34
 Identities = 90/325 (27%), Positives = 156/325 (48%), Gaps = 6/325 (1%)

Query: 1   MKTINKIT-IAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKL 59
           +K I K+T IA L  ++  S  A T +K     +  + +   A      +EE   GE ++
Sbjct: 10  IKQIVKMTSIAALLGASLNSWAAPTEIKFSHVVAENTPKGQMALKFKQLVEERLPGEYQV 69

Query: 60  ALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFE 119
            ++P++QL  D   L  L L D+        +   +  + +   LP++ KD D + R  +
Sbjct: 70  NVFPNSQLFGDNNELSALLLNDVQFVAPSLSKFERYTKKLQLFDLPFLFKDMDAVNRFQQ 129

Query: 120 SDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNYAK 179
           SD GQ + + M +K     L   +NG ++ +++ PL   ED +G K R+  +       +
Sbjct: 130 SDAGQQLLNSMKRK-GVVGLGYLHNGMKQFSASSPLVLPEDAQGKKFRIMASDVLAAQFQ 188

Query: 180 LSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIIS 239
              A P    FSEV+  LQT A+DGQEN    I + KFYEVQ N+  ++H V D MV+ S
Sbjct: 189 AVEAIPVKKPFSEVFTLLQTRAIDGQENTWSNIYSKKFYEVQSNITESNHGVLDYMVVTS 248

Query: 240 ESTWQKLSDTDKDIIQ----KAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPF 295
            + W+ L    + +I+    +A+    +     V   +  ++   +SE   +T      +
Sbjct: 249 NTFWKSLPADKRKVIKASLDEAIAYGNEIAAAKVNKDKQAIIDSKRSEVTYLTPEQRAAW 308

Query: 296 REAMQPLYKEFDSNIGQPIVSKLAA 320
             AM+P++ +F+  IG+ ++    A
Sbjct: 309 VNAMKPVWAQFEDKIGKDLIDAAVA 333