Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., C4-dicarboxylate-binding periplasmic protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  130 bits (326), Expect = 6e-35
 Identities = 84/325 (25%), Positives = 160/325 (49%), Gaps = 6/325 (1%)

Query: 1   MKTINKITIAILTLSAAASVNAATT-LKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKL 59
           +KT+ K+       + + +V AA   +K     +  + +   A    + +E+   GE  +
Sbjct: 13  LKTVAKMLALASVFATSFNVFAAPVEIKFSHVVAENTPKGQMALKFKELVEQRLPGEYTV 72

Query: 60  ALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFE 119
           +++P++QL  D   L  L L D+        +   +  R +   LP++  D D + R  +
Sbjct: 73  SVFPNSQLFGDNNELAALLLNDVQFVAPSLSKFERYTKRLQVFDLPFLFNDMDAVNRFQQ 132

Query: 120 SDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNYAK 179
            + GQ + + M +K     L   +NG ++ T+N PL    D KGLK RV  +        
Sbjct: 133 GEAGQALLNSMSRK-GIVGLGYLHNGMKQFTANTPLKQPSDAKGLKFRVMASDVLAAQFD 191

Query: 180 LSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIIS 239
             GA P    FSEV+  LQT A+DGQEN      + KFYEVQ ++  ++H V D MV+ S
Sbjct: 192 AVGAIPVKKPFSEVFTLLQTRAIDGQENTWSNTYSQKFYEVQSHITESNHGVLDYMVVTS 251

Query: 240 ESTWQKLSDTDKDIIQKAVQK---VGDAHTQTVKTQEAELVSFFK-SEGINVTYPDLEPF 295
           ++ W+ L    + +I++A+ +   +G+        ++ +L+   K S+ + ++  + + +
Sbjct: 252 DAFWKSLPADKRKVIKEALDESIALGNKIAAEKDNEDKQLILDSKLSQLVTLSPAERQQW 311

Query: 296 REAMQPLYKEFDSNIGQPIVSKLAA 320
            + M+P++ +F+  +G+ ++    A
Sbjct: 312 VDVMKPVWSKFEDQVGKDVIEAAVA 336