Pairwise Alignments

Query, 173 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 175 a.a., TRAP-type C4-dicarboxylate transport system, small permease component from Pseudomonas fluorescens FW300-N2E2

 Score = 46.2 bits (108), Expect = 3e-10
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 24  ALLAVLTWQIGTRWLLNDPSLWSEELARLLFMYMCLVGCAIAIKRSSHVNITFFSDKLPE 83
           A+  ++ W +  R++L   S W E  A LL +    +G A + +  SH+ +   + +LP 
Sbjct: 26  AVALMIPWGVFARYVLGSGSSWPEPTAILLMIVFTFIGAAASYRSGSHMAVDMVTSRLPS 85

Query: 84  KARLSLVLSLEIAVLVSIGAIIVLGYQHAQR--NAFFELI-TLGISSSWMNYSLPVGGVF 140
             R    +  ++ +      + V G +      N F   I TL +  ++M   +P+GG  
Sbjct: 86  HWRTVASVFTQLLMAAVCIFMTVWGAKLCMTTWNQFMSAIPTLRVGITYM--PIPIGGF- 142

Query: 141 MVFRQLEKIFNLMKLLLGVSSSASLIDQQVTE 172
                L  IF L KL LG  S   ++   + E
Sbjct: 143 -----LTLIFVLEKLFLGDQSQRRVVQFDLVE 169