Pairwise Alignments

Query, 173 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 212 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) from Shewanella loihica PV-4

 Score = 47.4 bits (111), Expect = 2e-10
 Identities = 24/102 (23%), Positives = 49/102 (48%)

Query: 5   MLRKIINNIEEIITVPLMAALLAVLTWQIGTRWLLNDPSLWSEELARLLFMYMCLVGCAI 64
           M+ +  ++IEE++   L+ A+  ++  ++  R+  N   LW +EL   +  +  L G + 
Sbjct: 1   MMSRFFSHIEEVVLNALITAMTLLVFVEVIARFFFNTGFLWIQELTLTICGWFVLFGMSY 60

Query: 65  AIKRSSHVNITFFSDKLPEKARLSLVLSLEIAVLVSIGAIIV 106
            +K  +H+ +  F  KLP + R    +      L+  G  +V
Sbjct: 61  GVKVGAHIGVDAFVKKLPAQGRKYTAILAVAICLIYCGMFLV 102