Pairwise Alignments

Query, 173 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., TRAP-type C4-dicarboxylate transport system, small permease component from Dechlorosoma suillum PS

 Score = 49.7 bits (117), Expect = 4e-11
 Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 34/181 (18%)

Query: 6   LRKIINNIEEIITVPLMAALLAVLTWQIGTR------------WLLNDPSLWSEELARLL 53
           + K++N++EE I   LM A   ++   +  R            WLL+    W++EL  ++
Sbjct: 1   MNKLLNHLEEAIITFLMGAATVIIFLSVVHRYLSGYDIPGLQDWLLSLNFSWAQELCIIM 60

Query: 54  FMYMCLVGCAIAIKRSSHVNITFFSDKLPEKARLSLVLSLEIAVLVSIGAIIVLG----Y 109
           F++M   G A  ++   HV +    ++L    R   VL   +A     G +  LG    +
Sbjct: 61  FVWMAKFGAAYGVRTGIHVGVDVVINRLKTANRAKFVLFGLLAGATFTGIVGTLGATFVW 120

Query: 110 QHAQRNAFFELITLGISS---------------SWMNYS-LPVGGVFMVFRQLEKIFNLM 153
           ++     FF     GI +               +W+ YS +P+G   M FR L+   + +
Sbjct: 121 ENGAHYQFFH--WFGIEAPDLFEGPITPDLEWPTWVVYSAVPLGSYLMCFRFLQVAVSFL 178

Query: 154 K 154
           K
Sbjct: 179 K 179