Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

 Score =  298 bits (764), Expect = 2e-85
 Identities = 147/411 (35%), Positives = 246/411 (59%)

Query: 11  LLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLMNSA 70
           L+F G+PV  SL       +++ +   +   A ++    +++TLLA+PFF+L G  M + 
Sbjct: 13  LMFIGVPVAVSLGLAGSLTIMIFSQDSVRSLAIKLFETSEHYTLLAIPFFLLAGAFMTTG 72

Query: 71  GITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAKYH 130
           G+  R+ +FA + VGHI G L    ++A +LF+ +SGS+ A    +G + I  M  + Y 
Sbjct: 73  GVARRLIDFANACVGHIRGGLAIGAVLACMLFAALSGSSPATVAAVGSIAIAGMVRSGYP 132

Query: 131 DDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVMSYFI 190
             F  G+   +  +G L+PPSV +V+Y   + TS+G LF+AG +PG+L   ALM+  Y I
Sbjct: 133 QAFGAGIVCNAGTLGILIPPSVVMVVYAAATETSVGKLFMAGVVPGILLGGALMIAIYII 192

Query: 191 CKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLYALFLG 250
             K+    LP+AS RE   + ++A   LL  VII+GGI+SG FTPTEAAAV+++Y+ F+ 
Sbjct: 193 AVKKNLPALPRASFREWLSAARKAIWGLLLMVIILGGIYSGMFTPTEAAAVAAVYSAFVA 252

Query: 251 TVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTISDNP 310
             VY  ++L+   ++L E+   + ++  ++    +F  ++  EQ+PQ +  + +     P
Sbjct: 253 LFVYKDISLRDCPKVLLESGKLSIMLMFIIANAMLFAHVLTTEQIPQAITAWVIEAGLQP 312

Query: 311 LVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGILTP 370
            + LL++N++LL  G F+E  A++L+L P L P+A  +GIDP+H G++ ++N+ IG++TP
Sbjct: 313 WMFLLVVNIVLLIAGAFMEPSAIILILAPILFPIAIQLGIDPIHLGIIMVVNMEIGLITP 372

Query: 371 PMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPEL 421
           P+G+ L+V S V  +P   + R VLP L  +   L ++   P  +L LP +
Sbjct: 373 PVGLNLFVASAVTGMPVTQVIRAVLPWLALMLSFLVIITYVPSISLALPNM 423