Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., D-gluconate TRAP transporter, large permease component (from data) from Pseudomonas stutzeri RCH2

 Score =  306 bits (783), Expect = 1e-87
 Identities = 163/404 (40%), Positives = 240/404 (59%)

Query: 9   LGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLMN 68
           LG +  GMP+ F+L+      +   +   +   AQ +  G D+F LLAVPFF+L G LMN
Sbjct: 11  LGFMTLGMPIAFALLLTGSVLMWYLDFWDVQLLAQNLQAGADSFPLLAVPFFILAGELMN 70

Query: 69  SAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAK 128
           + GI+ RI   A++  GH  G LG+V I AS+L + MSGSALAD   L  L +  MR+  
Sbjct: 71  AGGISRRIIAMAQAYFGHKRGGLGYVAIAASVLLASMSGSALADTAALATLLLPMMRERG 130

Query: 129 YHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVMSY 188
           Y    + GL AA  II P++PPS+P VIYGVV+ TSI  LFLAG +PGL+  + L+V   
Sbjct: 131 YPLSSSSGLVAAGGIIAPIIPPSMPFVIYGVVTGTSISQLFLAGMVPGLIMGMGLIVAWT 190

Query: 189 FICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLYALF 248
            I ++       KAS  E+ + L +   +L+ PVII+GG+  G FTPTEAA V+++YAL 
Sbjct: 191 LIARRIDEPKQEKASAAERRRVLVDGAAALMLPVIIVGGLRGGLFTPTEAAVVAAVYALA 250

Query: 249 LGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTISD 308
           + T++Y  L   G +E+L     TTA V  +    TV  +++   QLP  +A     ++ 
Sbjct: 251 VSTLLYRELNWAGLVEVLTRASRTTASVMFLCAAATVSAYMITLAQLPDEIAAMLGPLAQ 310

Query: 309 NPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGIL 368
           +P +L++ I LL++ +G  ++    +L+L P L P+A   GIDPV+FGVM +L   IG++
Sbjct: 311 DPKLLMVAIMLLMIAVGMVLDLTPTILILGPVLAPIAIKAGIDPVYFGVMFVLIGSIGLI 370

Query: 369 TPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFP 412
           TPP+G  L VV  +G +   TL RGV+P  +   +++ L+   P
Sbjct: 371 TPPVGTVLNVVGGIGRLRMETLVRGVMPFFLIYLVIVGLLIAVP 414