Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., TRAP dicarboxylate transporter, DctM subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  252 bits (643), Expect = 2e-71
 Identities = 150/419 (35%), Positives = 227/419 (54%), Gaps = 3/419 (0%)

Query: 8   WLGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLM 67
           +LGL   G P+  +L  +A +  IL    GI      +  GI  + LLA+P F+L G + 
Sbjct: 10  FLGLTLLGAPLAVAL-GLAGSVAILEAQLGILSVPTTVYAGIAKYPLLAIPVFILAGLIF 68

Query: 68  NSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDA 127
              G+  ++ +FA S+VG   G L  V ++  ++  G+SGS  ADA  +  + I S+  A
Sbjct: 69  ERVGVARQLVSFASSIVGARNGGLAIVAVLVCMVMGGISGSGPADAAAVATVMIPSLHKA 128

Query: 128 KYHDDFAGGLTAASCIIGPLVPPSVPLVIYGV-VSNTSIGALFLAGAIPGLLCCIALMVM 186
            Y   F+  + AA      L+PPSV  +IY V V   S+ ALF  G IPGLL  ++L+  
Sbjct: 129 GYPKAFSASVIAAGAATAILIPPSVAFIIYSVLVPQASVPALFAGGLIPGLLAGLSLLAP 188

Query: 187 SYFICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLYA 246
             ++ ++ G+       R   + SLK A   LL PVII+GG+  G FTPTEAA V+  Y 
Sbjct: 189 IVYLSRRHGFGMADSGPRPGFWVSLKGAIWGLLAPVIILGGLRLGLFTPTEAAVVAVFYG 248

Query: 247 LFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTI 306
           LF+G  +  TL+ +  I++L +    + VV L++   +VF W  +       +A   L  
Sbjct: 249 LFVGVFILRTLSGRMLIDMLADAAEMSGVVLLIIALASVFAWAGSTLGAFDAVAGAALQA 308

Query: 307 SDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIG 366
           +DN +V+LL++NLLLL LG  ++++++ L+L+P LVP   A   DPV FGVM  +NL +G
Sbjct: 309 TDNEVVVLLMLNLLLLGLGMVLDAVSIFLILLPLLVPFMEAFHWDPVWFGVMVTMNLAVG 368

Query: 367 ILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPELFLGY 425
             TPPM + L V +R+  +     T   L  +  + + L +V   P+ TL LP   LGY
Sbjct: 369 QFTPPMAVNLMVTTRIAGVRMEAATGWTLWFVGAMIVALMVVTFVPELTLWLPRA-LGY 426