Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

 Score =  204 bits (519), Expect = 4e-57
 Identities = 119/420 (28%), Positives = 220/420 (52%), Gaps = 6/420 (1%)

Query: 8   WLGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLM 67
           ++ L+   +PV  ++   A+  L+++    ++   + +  GID F L AVP F+LTG ++
Sbjct: 23  FVALIALAVPVWAAIGAAAITMLVMSGDLPLSAIGESLFTGIDAFALTAVPLFILTGDVL 82

Query: 68  NSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDA 127
              G++++  + A++L     G  G   ++   +F+ +SGS  A A  +G++ I  + ++
Sbjct: 83  VRTGLSKKFLDVAEALTCWTRGGFGSATVLVCGMFAAISGSDAAGAAAVGRMTIARLVES 142

Query: 128 KYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVMS 187
            Y   +A  L AA    G L+PPS+  +I G+V   S   LFLA  IPG+   ++++V +
Sbjct: 143 GYPRPYACALVAAGACTGILIPPSIAYIIIGLVLGISASTLFLAALIPGIAILVSILVTN 202

Query: 188 YFICKKRGYMTLPKASRREQF----KSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSS 243
             + +   Y T       E      +SLK  + + + P II  GIFSG+ TPTEA A + 
Sbjct: 203 IIMNRLYTYETGGNMGLGEWLGNLGQSLKSGWYAFIVPGIIFYGIFSGRLTPTEAGATAV 262

Query: 244 LYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYF 303
           +  + +G ++  TL L  F  +L  +     V+  ++         +A   +PQ      
Sbjct: 263 VVTILMGFLL-GTLKLADFPAMLVSSAKVNGVILPIIAFSAPLAEALAIMGVPQGFVTAV 321

Query: 304 LTISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNL 363
             ++D+P +L+LL+  +L+  G  +E+   +++L P L P+A  +G++ + F +M I  L
Sbjct: 322 TGLTDDPSILILLMICILIAAGCVMETTPNIVILAPILKPLADNIGMNEIQFCIMMITAL 381

Query: 364 MIGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQF-TLLLPELF 422
            +G +TPP+G+ L+VVS +       +    +P ++ + IV+ L+A  P   T LLP+++
Sbjct: 382 GVGFITPPLGLNLFVVSGITGESILKIAARAIPFVLTMLIVVLLIAYLPAISTTLLPDIY 441