Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

 Score =  171 bits (434), Expect = 4e-47
 Identities = 112/355 (31%), Positives = 186/355 (52%), Gaps = 10/355 (2%)

Query: 11  LLFAGMPVGFSLIFVALAFLIL-TNSTGINFAAQ--QMLGGIDNFTLLAVPFFVLTGHLM 67
           L+F  +P+G S+  V L  LI+ T+ T + F     +      +++L  VP F+L GH  
Sbjct: 17  LIFLRVPIGLSMFLVGLVGLIIVTDGTQVAFGRMKSETYSTFSSYSLTIVPMFLLMGHFA 76

Query: 68  NSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDA 127
              G++  +F  A+  +GH  G +    I A   F  + GS+LA A  +G++ +  +R+ 
Sbjct: 77  TLGGMSTALFKAAEGFLGHKKGGVAMAAIGACAGFGAICGSSLATAATMGRVALPELRNY 136

Query: 128 KYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMV-M 186
            Y   F+    AA   +G L+PPSV LVIY +++  +I  LFLA  IPG+L  I  ++ +
Sbjct: 137 GYAGGFSTATLAAGGTLGILIPPSVVLVIYAILTEQNIAKLFLAAFIPGILAAIGYVIAI 196

Query: 187 SYFICKKRGYM-TLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLY 245
           S ++    G   T P     E+F +L   +  LL   +++GGI+ G FTPTE AAV    
Sbjct: 197 SIYVRVFPGSAGTRPPVPWGERFAALFHVWPVLLVFGLVVGGIYLGWFTPTEGAAVG--- 253

Query: 246 ALFLGTVVY--NTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYF 303
           AL  G + +    L  +   +    T  +TA++  +V+G   +   +A  ++PQ LAD+ 
Sbjct: 254 ALGTGLIAWLNGGLNRETLTDSFMVTARSTAMIFFIVLGAGFYNGFLALTKVPQELADFV 313

Query: 304 LTISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVM 358
           ++   +P ++L+LI    L  G  ++SL+++LL +P   PV SA+    V+   M
Sbjct: 314 VSQGLSPWMVLMLILAFYLVFGCLMDSLSMILLTIPIFYPVISAMDFGLVNLPAM 368



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 353 VHFGVMAILNLMIGILTPPMGMALYVVSRVGDIPFHTLT-RGVLPLLVPLFIVLALVAVF 411
           + FG++ ++ + +G++TPP+GM L+V++ +        T + V+  +    I + ++  F
Sbjct: 430 IWFGILVLIVVEVGLITPPVGMNLFVINAMDRTTRMVDTYKAVMFFVASDLIRVVILVAF 489

Query: 412 PQFTLL 417
           P  TLL
Sbjct: 490 PIITLL 495