Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) from Phaeobacter inhibens DSM 17395

 Score =  265 bits (678), Expect = 2e-75
 Identities = 149/454 (32%), Positives = 240/454 (52%), Gaps = 41/454 (9%)

Query: 9   LGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGID-NFTLLAVPFFVLTGHLM 67
           +GLL  G+P+  +L   +  FL++ + + +   A  +    + +FTLLA+PFF+L    M
Sbjct: 11  IGLLLIGVPIAVALGLSSTLFLLIYSDSSLASVAGTLFEAFEGHFTLLAIPFFILASSFM 70

Query: 68  NSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDA 127
            + G+  RI  F+ + VGH+ G L    + A +LF+ +SGS+ A    +G + I  MR  
Sbjct: 71  TTGGVARRIIRFSIACVGHLPGGLAIAGVFACMLFAALSGSSPATVVAIGSIVIAGMRQV 130

Query: 128 KYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVMS 187
            Y  +FA G+   +  +G L+PPS+ +V+Y      S+G +FLAG IPGL+  + LMV  
Sbjct: 131 GYSKEFAAGVICNAGTLGILIPPSIVMVVYAAAVEVSVGRMFLAGVIPGLMAGLMLMVTI 190

Query: 188 YFICKKRGYMTLPKA---SRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSL 244
           Y + K +    LPK       E   S   A + LL   II+GGI+ G FTPTEAAAV+S+
Sbjct: 191 YVMAKVK---NLPKGEWLGWGEVAASAANASVGLLLIGIILGGIYGGIFTPTEAAAVASV 247

Query: 245 YALFLGTVVYNTL-------------------------TLQGFI---------EILKETV 270
           YA F+ T VY  +                         T+  FI           L E  
Sbjct: 248 YAFFVATFVYRDMGPLKSAPKPKDMGQFLTMLPKMLGQTVVYFIPSFFHADTRHALFEAG 307

Query: 271 NTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTISDNPLVLLLLINLLLLFLGTFIES 330
             T  +  ++    +   ++  EQ+PQ +A   L+    P++ L+++N++LL  G F+E 
Sbjct: 308 KLTVTLLFVIANALILKHVLTDEQVPQQIATAMLSAGFGPVMFLIVVNVILLIGGQFMEP 367

Query: 331 LALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGILTPPMGMALYVVSRVGDIPFHTL 390
             LL+++ P + P+A  +GIDP+H G++ ++N+ IG++TPP+G+ L+V S V  +P   +
Sbjct: 368 SGLLVIVAPLVFPIAIELGIDPIHLGIIMVVNMEIGMITPPVGLNLFVTSGVAGMPMMAV 427

Query: 391 TRGVLPLLVPLFIVLALVAVFPQFTLLLPELFLG 424
            R  LP L  LF+ L ++   P  + +LP   +G
Sbjct: 428 VRAALPFLAVLFVFLIMITYIPWISTVLPNAVMG 461