Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) from Shewanella loihica PV-4

 Score =  238 bits (607), Expect = 3e-67
 Identities = 136/444 (30%), Positives = 236/444 (53%), Gaps = 35/444 (7%)

Query: 12  LFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGI-DNFTLLAVPFFVLTGHLMNSA 70
           +  GMP+  +L F ++  ++L +   +   A ++     +++TLLA+PFF+L+   +++ 
Sbjct: 14  MLLGMPIAIALGFSSMLTILLFSDDSLASVALKLYESTSEHYTLLAIPFFILSSAFLSTG 73

Query: 71  GITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAKYH 130
           G+  RI +FA   VGHI G L   ++MA +LF+ +SGS+ A    +G + I  M  A Y 
Sbjct: 74  GVARRIIDFAMDSVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIGSIVIVGMVRAGYP 133

Query: 131 DDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVMSYFI 190
           + FA G+   S  +G L+PPS+ +++Y   +  S   +F+AG IPGL+  + LM+  Y +
Sbjct: 134 EKFAAGVITTSGTLGILIPPSIVMLVYAAATEVSAARMFMAGLIPGLMMGLLLMLAIYIV 193

Query: 191 CKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLYALFLG 250
            + +   + P    R    S  +A   L   VI++G I+ G  +PTEAAAV+ +YA F+ 
Sbjct: 194 ARIKKLPSRPFPGFRPLAISSAKAMGGLALIVIVLGSIYGGIASPTEAAAVACVYAYFIA 253

Query: 251 TVVYN--------------------TLTLQGFIEI----------LKETVNTTAVVALMV 280
              Y                      L   GF+ +          ++  V   A V++M+
Sbjct: 254 VFGYRDIGPLKNVSWRDSGEPLIRAILRNLGFMVLAVFKTPADKEIRHVVRDGAKVSIML 313

Query: 281 M----GVTVFGWIVAREQLPQMLADYFLTISDNPLVLLLLINLLLLFLGTFIESLALLLL 336
           +       +F  ++  E++P ++A+  + +       L+++NLLLL  G F+E  A+LL+
Sbjct: 314 LFIIANAMLFAHVLTTERIPHLIAETIVGMGLPVWGFLIIVNLLLLAAGNFMEPSAILLI 373

Query: 337 LVPFLVPVASAVGIDPVHFGVMAILNLMIGILTPPMGMALYVVSRVGDIPFHTLTRGVLP 396
           + P L P+A+ +GIDP+H G++ ++N+ IG+LTPP+G+ L+V + +       +    +P
Sbjct: 374 MAPILFPIATQLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTAGITGRSMGWVIHSCIP 433

Query: 397 LLVPLFIVLALVAVFPQFTLLLPE 420
            L  L   LAL+   PQ +L LPE
Sbjct: 434 WLALLLFFLALITYIPQISLFLPE 457