Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  242 bits (618), Expect = 2e-68
 Identities = 130/444 (29%), Positives = 238/444 (53%), Gaps = 35/444 (7%)

Query: 12  LFAGMPVGFSLIFVA-LAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLMNSA 70
           +F GMP+  +L F + L  L  +N +  + A +      +++TLLA+PFF+L+   +++ 
Sbjct: 14  MFLGMPIAIALGFSSMLTILFFSNDSLASVALKLYESSSEHYTLLAIPFFILSSAFLSTG 73

Query: 71  GITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAKYH 130
           G+  RI +FA   +GHI G L   ++MA +LF+ +SGS+ A    +G + I  M  A Y 
Sbjct: 74  GVARRIIDFAMDSIGHIRGGLAMASVMACMLFAAVSGSSPATVAAIGSIVIVGMVKAGYP 133

Query: 131 DDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVMSYFI 190
           + FA G+   S  +G L+PPS+ +++Y   +  S   +F+AG IPGL+    LM++ Y +
Sbjct: 134 EKFAAGVITTSGTLGILIPPSIVMLVYAAATEVSAARMFMAGLIPGLMMGFLLMIVIYIV 193

Query: 191 CKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLYALFLG 250
            + +   + P    ++   S  +A   L   +I++G I+ G  +PTEA+AV+ +YA F+ 
Sbjct: 194 ARFKNLPSRPFPGFKQLGISSAKALGGLALIIIVLGSIYGGVASPTEASAVACMYAYFIA 253

Query: 251 TVVYNTL-------------------------TLQGFIE---------ILKETVNTTAVV 276
              Y  +                            G I+         ++++    + ++
Sbjct: 254 VFGYRDIGPLKNVAWRNPNEPIPSAIVRNLGHMALGLIKTPIDKEIRHVVRDGAKVSIML 313

Query: 277 ALMVMGVTVFGWIVAREQLPQMLADYFLTISDNPLVLLLLINLLLLFLGTFIESLALLLL 336
             ++    +F  ++  E++P ++A++ + +       L+++NLLLL  G F+E  A++L+
Sbjct: 314 LFIIANAMLFAHVLTTERIPHIIAEHIVGMGLPAWGFLIIVNLLLLAAGNFMEPSAIVLI 373

Query: 337 LVPFLVPVASAVGIDPVHFGVMAILNLMIGILTPPMGMALYVVSRVGDIPFHTLTRGVLP 396
           + P L P+A+ +GIDP+H G++ ++N+ IG+LTPP+G+ L+V + +       + + VLP
Sbjct: 374 MAPILFPIATHLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTAGITGRSIGWVIQSVLP 433

Query: 397 LLVPLFIVLALVAVFPQFTLLLPE 420
            L  +   LAL+   PQ +L LPE
Sbjct: 434 WLALMLAFLALITYVPQISLFLPE 457