Pairwise Alignments

Query, 298 a.a., N-acetylneuraminate lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 297 a.a., dihydrodipicolinate synthase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 65.9 bits (159), Expect = 1e-15
 Identities = 56/273 (20%), Positives = 116/273 (42%), Gaps = 2/273 (0%)

Query: 3   KLTGLIAAPHTPFTKDNKVNFAAIDQIAELLIEQGVKGAYVCGTTGEGIHCSVEERKAIA 62
           KL G+  A  TPF +D  V++ A+ ++ + L++       V GTT E    + EE+K I 
Sbjct: 5   KLKGMGVALITPFKEDESVDYDALMRLVDYLLQNNADFLCVLGTTAETPTLTEEEKKTIK 64

Query: 63  ERWVKAVDGKLDVILHTGALSIVDTINLTEHAETLDIFATSAIGPCFFKPGSVDDLVEYC 122
           +  +  V+G++ ++L  G  +    +   ++ +   + A  ++ P + KP S + + ++ 
Sbjct: 65  KMVIDRVNGRIPILLGVGGNNTRAIVETLKNDDFTGVDAILSVVPYYNKP-SQEGIYQHY 123

Query: 123 AQVAAAAPSKGFYYYHSGMSGVNLDLEQFLIKGEQRIPNLYGAKFNNADLYEYQRCVRVS 182
             ++ A       Y   G +GVN+  E  L +  +   N+   K  + ++ +    ++  
Sbjct: 124 KAISEATELPIVLYNVPGRTGVNMTAETTL-RIARNFSNVIAIKEASGNITQMDDIIKNK 182

Query: 183 NRKFDIPFGVDEFLPAGLAVGAVGAVGSTYNYAAPLYLKIIEAFNHGKHDEVAALMDKVI 242
              F++  G D      + +GAVG +    N     + ++      G       +  +  
Sbjct: 183 PDNFNVISGDDGITFPLITLGAVGVISVIGNAFPREFSRMTRLALQGDFANALTIHHRFT 242

Query: 243 AIIRVLVEYGGVAAGKVAMQLHGIDAGDPRLPI 275
            +  +L   G  A  K  +   G+     RLP+
Sbjct: 243 ELFDLLFVDGNPAGVKSMLNAMGMIENKLRLPL 275