Pairwise Alignments

Query, 286 a.a., YafY family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  218 bits (555), Expect = 1e-61
 Identities = 115/285 (40%), Positives = 179/285 (62%), Gaps = 7/285 (2%)

Query: 6   IRWDLLFRYRMIEIIALWEGRLTTNHLIQSFGIGRQQASKDINTY--LADIAPGNLVYDK 63
           ++W+ L R+R+IEI+ALWEGRLTTNHL  SF IGRQQAS+DI  Y  L +I P  LV+D+
Sbjct: 21  VKWEQLLRFRLIEIVALWEGRLTTNHLCNSFNIGRQQASRDIANYQKLFEIPP--LVHDR 78

Query: 64  HLKGYKPSDSFSPKLTSGHADEYLHILSRSEDMTVT-FNELDMGFEHSTMVRPVTRNISP 122
            +KGY+P++ F P+ T G  +EYL +L++  +  +  F+   +G  +S ++    R+++P
Sbjct: 79  GIKGYRPTNDFKPRFTQGTPNEYLSLLNKYTNENIDGFDLQGLGQANSIVLSVPDRHVAP 138

Query: 123 QVLRPLVQAIREKKRVDICYTSLKDGEQSERIISPHTLVCTPLRWHVRAYCEQAGGYRDF 182
            ++R L+QA RE++ VD+ Y SL+   +  R I+PHTLV    RWHVRAYCE+  G+RDF
Sbjct: 139 IIVRRLLQAAREQRCVDVDYVSLEHPSERGRNIAPHTLVFDGFRWHVRAYCEEKKGFRDF 198

Query: 183 VLSRIQGIPDINNNAIHGKRDDVLWNTKVNVELIPDLRLNEKQRAVIEKDYAMSDGVLRI 242
           VLSR +  P+I + +   K DD  WN +   E+  +  L ++Q+ V++ DY M +    +
Sbjct: 199 VLSRFRNEPEILDKSSLTKEDDDDWNIEETFEITTNPFLTQEQQLVVKADYGMLEAQFFV 258

Query: 243 ATNASLVRYVLDTYNI--DIHVQKSNPQGQQIVLGNRDELISYVL 285
           +   +L++Y +   NI  D    KS+PQ  Q+ +     L  ++L
Sbjct: 259 SCRRALIKYYVKRLNICLDTKKLKSSPQANQLTVAQPHSLKRWIL 303