Pairwise Alignments

Query, 793 a.a., SAM-dependent DNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 728 a.a., Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) from Xanthomonas campestris pv. campestris strain 8004

 Score =  418 bits (1075), Expect = e-121
 Identities = 293/810 (36%), Positives = 421/810 (51%), Gaps = 113/810 (13%)

Query: 1   MDHSVHNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRF 60
           M++  H +L   IW IA+  LR  Y   +YR V+LP+VVLRRLD +LEP+KEAVL+    
Sbjct: 1   MNNQTHEELKGKIWEIANR-LRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKEAVLK---- 55

Query: 61  QKEEMNEIELDDAPLCATSG--------YVFYNTSKWTLQTLFSTATNNQQILLANFEDY 112
           Q E++   +  +  +    G        +  YN S +T + L   A N    +  N  +Y
Sbjct: 56  QHEKLLAKDTPEQAMHRLLGKAADPKRKFPLYNVSAYTFEKLLGDAEN----IAPNLSNY 111

Query: 113 LNGFSENVKEIVECFNLKAQIRHMAGKDVLLDVVEKFVSPYINLTPAVKEDPEGNKLPAL 172
           +NGFS   + I E F    QI  +   + L  +++   +  I+L P             +
Sbjct: 112 INGFSPEARRIFERFKFGDQIDKLDASNRLFTIIKAMAN--IDLHP-----------DRI 158

Query: 173 SNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDNLPLSI--TVYDP 230
            NL MGY+FE L+ +FNE+ NEEAG+HFTPREVI LM +LV+    +     I  ++YDP
Sbjct: 159 DNLQMGYLFEHLVMRFNEQANEEAGDHFTPREVIRLMANLVYTGEHEVYKPGIVRSIYDP 218

Query: 231 ACGSGGMLTETQNFVEEKYPASNRDIYLYGKEINDETYAICKSDMMIKGNNPENIRVGST 290
            CG+GGML+E++ F+  +  A++  ++LYG+E NDE++AIC SDM+IK  +  NI  G T
Sbjct: 219 TCGTGGMLSESEKFILGQNAAAH--LHLYGQEYNDESWAICCSDMLIKDEDTANIVKGDT 276

Query: 291 L----STDEFSSNRFDFMLSNPPYGKSWASEQKHIKEGKEV---VDGRFKVKLKDYWGVE 343
           L    + D F   RF +ML+NPP+G  W  +QK + E +       GRF   L       
Sbjct: 277 LGDGKTKDGFEGERFHYMLANPPFGVEW-KDQKTVVENEHANHGFAGRFGAGL------- 328

Query: 344 SEQEAIPRSSDGQLLFLMEMVTKM----KSPQDSPLGSRIASVHNGSSLFTGDAGSGESN 399
                 P  +DG LLFL  M+ KM    +   D P GS+IA V NGS LF+GDAGSG SN
Sbjct: 329 ------PAINDGSLLFLQHMIAKMHPYEEGHPDKP-GSKIAIVFNGSPLFSGDAGSGPSN 381

Query: 400 IRRFIIENDMLDAIVQLPNNLFYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRK 459
           IRR+IIE D LD IV LP+ LFYNTGI TY+WL+ N KPE RQG VQLID +  FRK+ K
Sbjct: 382 IRRWIIEKDWLDTIVALPDQLFYNTGIYTYVWLVTNRKPEERQGYVQLIDGTRFFRKMMK 441

Query: 460 NLGNKNCEFSPEHI---AEIVSTYLENQSVERAIDEK--GDPVGIAAQVFKNQDFGYYKV 514
           +L NK  E S E I    E+   Y + +S +  ID K       + ++VF+N++FG+ KV
Sbjct: 442 SLNNKRNEISDEQIEALTELYGNYGDGESADVVIDHKTGETETRVVSRVFENREFGFLKV 501

Query: 515 NIERPDRRNAQFRADLIEPLRFENSQREVMEYLYAEYGEQVYDAGFVKGIEKEITKWCEE 574
            +ERP R N            FE +   +     A   EQ   A      +++       
Sbjct: 502 TVERPLRMN------------FEATPGRI-----ARLDEQSAFANLATSKKRKD------ 538

Query: 575 NDISLNKAAKTKLLDTKNWIKQRTLVNVASQLHKKIGDEVYNDFNQFKQLVDAELTSLGL 634
                 KAA+ ++ + +    QR++  + ++L  K    +Y+D   F+  ++      G+
Sbjct: 539 -----EKAARQEIAEGQ--AMQRSIRELLAELAAK---GIYSDREVFEADLEKAAKKAGI 588

Query: 635 KLSAPEKKAILDAVSWYDENAEKVIKKVAKLKQDKLDELLENYECELQDLPDFGYYPTGN 694
           KL AP +KAI  A+   D  A+  I + AK + +   EL +     L         P G 
Sbjct: 589 KLPAPIRKAIFVALGERDPQAK--ICRDAKGRPEPDSELRDTENISL---------PEGT 637

Query: 695 HNEFVTYESSSDLRDSESVPLEQSIYQYFLDEVKPHVDEAWINLESVKIGYEISFNKYFY 754
                         D        +I  Y   EV PHV +AW++    K+GYEI  N++FY
Sbjct: 638 ELPLPMAFGPDKPNDDLVEAFRDTIEDYMRREVLPHVADAWVDFSKTKVGYEIPINRHFY 697

Query: 755 RHKPLRSMDEVAGDIIALEQKAEGLIADIL 784
            +KP R + ++  DI    ++ EG IAD+L
Sbjct: 698 VYKPPRPLPQIESDI----RQLEGEIADLL 723