Pairwise Alignments

Query, 793 a.a., SAM-dependent DNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 675 a.a., type I restriction-modification from Synechococcus elongatus PCC 7942

 Score =  376 bits (966), Expect = e-108
 Identities = 229/524 (43%), Positives = 318/524 (60%), Gaps = 56/524 (10%)

Query: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEMNEI 68
           L +FIWS+AD  LR  Y +  Y  +ILP  VLRRLD +L P+K AVLEE   ++ +    
Sbjct: 101 LSAFIWSVAD-LLRGDYKQSDYGKIILPFTVLRRLDCVLAPTKAAVLEEKVLRESQ---- 155

Query: 69  ELDDAP-LCATSGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSENVKEIVECF 127
            L   P L   +G  F NTS   L+ L   A N  +    N   Y+ GF+  V++I + F
Sbjct: 156 GLAPEPFLLKKAGQNFCNTSPLDLKQLMGDADNIGE----NLRAYIQGFTPAVRDIFDSF 211

Query: 128 NLKAQIRHMAGKDVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEELIRK 187
               QI  +    +L  V E+F    I+L P             +SN  MG VFEELIRK
Sbjct: 212 EFHLQIDRLEKAGLLYLVTERFAQ--IDLHP-----------DTVSNAEMGLVFEELIRK 258

Query: 188 FNEENNEEAGEHFTPREVIELMTHLVFDPIKDNLPLSI-----TVYDPACGSGGMLTETQ 242
           F E +NE AGEHFTPREVI LM +L+F  I+D+  L+      ++YDP  G+GGML+  +
Sbjct: 259 FAELSNETAGEHFTPREVIRLMVNLLF--IEDDAALTQPGIVRSLYDPTAGTGGMLSVAE 316

Query: 243 NFVEEKYPASNRDIYLYGKEINDETYAICKSDMMIKGNNPENIRVGSTLSTDEFSSNRFD 302
             + E  P++   + L G+E+N E+YAICK+DM+IKG N +NI  G+TLS D+    ++D
Sbjct: 317 EHLTELNPSAR--LVLSGQELNPESYAICKADMLIKGQNIQNICFGNTLSDDKLPDAKYD 374

Query: 303 FMLSNPPYGKSWASEQKHIKEGKEVV--DGRFKVKLKDYWGVESEQEAIPRSSDGQLLFL 360
           +MLSNPP+G  W   QK ++   E +   GRF                +PR SDG LLFL
Sbjct: 375 YMLSNPPFGVEWKKIQKEVQREAEQLGYSGRFG-------------PGLPRVSDGSLLFL 421

Query: 361 MEMVTKMKSPQDSPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLDAIVQLPNNL 420
           + +++KM+   +   GSR+  V NGS LFTG AGSGES IRR+++END+++AI+ LP ++
Sbjct: 422 LHLISKMRPASEG--GSRLGIVLNGSPLFTGGAGSGESEIRRYVLENDLVEAIIALPTDM 479

Query: 421 FYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPEHIAEIVSTY 480
           FYNTGI+TYIW+L+N KP +R+GKVQLIDAS  ++K+RK+LG+K  E S E IAEI   +
Sbjct: 480 FYNTGISTYIWILSNRKPASRKGKVQLIDASGFWQKMRKSLGSKRKELSEEQIAEITRLF 539

Query: 481 LENQSVERAIDEKGDPVGIAAQVFKNQDFGYYKVNIERPDRRNA 524
               + E A D  G PV   +++F+N++FGY  + +ERP R  A
Sbjct: 540 ---GNFEEA-DRDGKPV---SKIFRNEEFGYRTITVERPQRDEA 576



 Score = 74.3 bits (181), Expect = 2e-17
 Identities = 35/85 (41%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 703 SSSDLRDSESVPLEQSIYQYFLDEVKPHVDEAWINLESVKIGYEISFNKYFYRHKPLRSM 762
           + + LRD+E+VPL + +  YF  EV PHV +AWI+ E  K+GYEI FN++FY   P RS+
Sbjct: 593 ADASLRDTENVPLTEDVDTYFQREVLPHVPDAWIDPEKTKVGYEIPFNRHFYVFTPPRSL 652

Query: 763 DEVAGDIIALEQKAEGLIADILGIS 787
           +E+  +   L+Q  + ++  + G+S
Sbjct: 653 EEIDAE---LQQVTDRILTMLGGLS 674