Pairwise Alignments

Query, 793 a.a., SAM-dependent DNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 585 a.a., type I restriction-modification system, M subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  144 bits (364), Expect = 1e-38
 Identities = 131/476 (27%), Positives = 213/476 (44%), Gaps = 82/476 (17%)

Query: 29  KYRDVILPMVVLRRLDTLLEPSKEAVLE--------EVRFQKEEMNEIELDDAPLCATSG 80
           +++D I  M+ L+RL    + ++E V E        +V  +    +E E D       S 
Sbjct: 5   EFKDYIFGMMFLKRLSDSFDEAREQVFEYYLAKGKTQVEAEALASDEDEYD-------ST 57

Query: 81  YVFYNTSKWT----LQTLFSTATNNQQILLANFEDYLNGFSENVKEIVECFNLKAQIRHM 136
           +     ++W+    L+     A N     +      L G   ++      FN+K ++   
Sbjct: 58  FYIPEVARWSALKDLKHNIGEALNTAAEAIEEHNPNLEGVLVSID-----FNIKNKLSDN 112

Query: 137 AGKDVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEELIRKFNEENNEEA 196
             +D+L          + N       D E   L       +G  +E LI+ F +   ++ 
Sbjct: 113 KLRDLL---------SHFNKYRLRNSDFERPDL-------LGTAYEYLIKMFADSAGKKG 156

Query: 197 GEHFTPREVIELMTHLVFDPIKDNLPLSITVYDPACGSGGMLTETQNFVEEKYPASNRDI 256
           GE +TP EV++L+  L+           + +YDP  GSGGML + +N++   +  +  ++
Sbjct: 157 GEFYTPSEVVQLLVALL------KPHAGMRIYDPTAGSGGMLIQMRNYLAT-HNENAANL 209

Query: 257 YLYGKEINDETYAICKSDMMIKGNNPENIRVGSTLS----TDEFSSNRFDFMLSNPPYGK 312
            LYG+E+N  T+AICK +M + G    +IR G TL     T + S   FD +++NPP+  
Sbjct: 210 SLYGQEMNLNTWAICKMNMFLHGVQSADIRKGDTLREPKHTIDGSLMTFDRVIANPPFSL 269

Query: 313 SWASEQKHIKEGKEVVDGRFKVKLKDYWGVESEQEAIPRSSDGQLLFLMEMVTKMKSPQD 372
           S        K GKE  D       KD +G        P    G L F+  M+    S  D
Sbjct: 270 S--------KWGKEDCD-------KDKYG--RFPYGTPPKDSGDLAFVQHMIA---STND 309

Query: 373 SPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLDAIVQLPNNLFYNTGITTYIWL 432
             +   +  V     LF G   S E +IR+ I+E+D+L+A++ LP+ LFY TGI   + +
Sbjct: 310 DGM---VGVVMPHGVLFRG---SSEKDIRKGILEDDLLEAVISLPSGLFYGTGIPACLLI 363

Query: 433 LNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPEHIAEIVSTYLENQSVER 488
           +N  KP  RQGKV  I A L + +     G       P+ I +IV+T+     ++R
Sbjct: 364 INKQKPSERQGKVLFIYAELEYHE-----GKNQNSLRPQDINKIVTTFDSFSEIKR 414