Pairwise Alignments

Query, 793 a.a., SAM-dependent DNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 611 a.a., type I restriction-modification system methylation subunit from Caulobacter crescentus NA1000

 Score =  365 bits (938), Expect = e-105
 Identities = 231/546 (42%), Positives = 311/546 (56%), Gaps = 73/546 (13%)

Query: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEM 65
           H  L +FIWS+AD  LR  Y +  Y  VILP  VLRRLD +LEP+K AVL E     E+ 
Sbjct: 3   HQSLSAFIWSVAD-LLRGDYKQSDYGKVILPFTVLRRLDCVLEPTKAAVLAE----HEKR 57

Query: 66  NEIELDDAP-LCATSGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSENVKEIV 124
               +D  P L   SG  FYNT K  L  +   A N    + AN   YL  FS  V++I 
Sbjct: 58  AAQGVDPEPFLRRVSGAGFYNTHKMDLTRVLGDADN----VAANLYAYLQAFSPAVRDIF 113

Query: 125 ECFNLKAQIRHMAGKDVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEEL 184
           E F   AQI  +A   +L  V EKF    I+L P            A+ N  MG VFEEL
Sbjct: 114 ERFEFHAQIERLAKAGLLYMVAEKFTR--IDLHPE-----------AVDNHQMGLVFEEL 160

Query: 185 IRKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDNLPLSI-----TVYDPACGSGGMLT 239
           IRKF E +NE AGEHFTPREVI LM  L+F  ++D+  LS      T+YDP  G+GGML+
Sbjct: 161 IRKFAELSNETAGEHFTPREVIRLMVELIF--VEDDAALSEPGVVRTIYDPTAGTGGMLS 218

Query: 240 ETQNFVEEKYPASNRDIYLYGKEINDETYAICKSDMMIKGNNPENIRVGSTLSTDEFSSN 299
             +  + ++ P +   + +YG+E+N E+YAICK+DM+IKG   +NI  G+TLS D   + 
Sbjct: 219 VAEERLLQQNPGAK--LSMYGQELNPESYAICKADMLIKGQPVDNIVFGNTLSDDGHHAA 276

Query: 300 RFDFMLSNPPYGKSWASEQKHIKEGKEV--VDGRFKVKLKDYWGVESEQEAIPRSSDGQL 357
           +FD+MLSNPP+G  W   +K ++   E    +GRF                +PR SDG L
Sbjct: 277 KFDYMLSNPPFGVEWKKVEKIVRAEAEQQGYNGRFG-------------PGLPRVSDGSL 323

Query: 358 LFLMEMVTKMKSPQDSPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLDAIVQLP 417
           LFL+ +++KM+   D   GSR   V NGS LFTG AGSGES IRR ++E+D+++AIV LP
Sbjct: 324 LFLLHLLSKMRPAVDG--GSRFGIVLNGSPLFTGGAGSGESEIRRHLLESDLVEAIVALP 381

Query: 418 NNLFYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPEHIAEIV 477
            ++FYNTGI TY+W+++N KP  R+GK+QLIDAS  +RK+RK+LG+K  E   + IA I 
Sbjct: 382 TDMFYNTGIATYVWIVSNKKPAARRGKLQLIDASGFWRKMRKSLGSKRKEMGEDDIAAIT 441

Query: 478 STY-------------LENQSVERAIDEKGDPVGIA-----------AQVFKNQDFGYYK 513
             +              E + V++ I E G    +A           +++  N  FGY  
Sbjct: 442 RLFGAFVEAELASVFDAEGKPVDKVIVEAGSAPPVAPEGGKVKLAPLSKILPNSAFGYRT 501

Query: 514 VNIERP 519
           + +ERP
Sbjct: 502 ITVERP 507



 Score = 81.6 bits (200), Expect = 1e-19
 Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 38/261 (14%)

Query: 540 QREVMEYLYAEYGEQVYDAGFVKGIEKEITKWCEENDISLNKAAKTKLLDTKN-WIKQRT 598
           + +++E + A   +  Y+ G    +      W   N     +  K +L+D    W K R 
Sbjct: 370 ESDLVEAIVALPTDMFYNTGIATYV------WIVSNKKPAARRGKLQLIDASGFWRKMRK 423

Query: 599 LVNVASQLHKKIGDEVYNDFNQFKQLVDAELTSLGLKLSAPEKKAILDAVSWYDENAEKV 658
             ++ S+  +   D++      F   V+AEL S+      P  K I++A S     A  V
Sbjct: 424 --SLGSKRKEMGEDDIAAITRLFGAFVEAELASVFDAEGKPVDKVIVEAGS-----APPV 476

Query: 659 IKKVAKLKQDKLDELLENYECELQDLPDFGYYPTGNHNEFVTY----------------E 702
             +  K+K   L ++L N          FGY         V                  +
Sbjct: 477 APEGGKVKLAPLSKILPNSA--------FGYRTITVERPLVDEAGKPVLGQKGKNKGKPQ 528

Query: 703 SSSDLRDSESVPLEQSIYQYFLDEVKPHVDEAWINLESVKIGYEISFNKYFYRHKPLRSM 762
           + S  RD+E+VPL + +  YF  EV PH  +AWI+ +  K GYEI FN++FY  +P R +
Sbjct: 529 ADSARRDTENVPLSEDVETYFAREVLPHAPDAWIDADKTKTGYEIPFNRHFYVFEPPRDL 588

Query: 763 DEVAGDIIALEQKAEGLIADI 783
            ++  D+ A+  + + +IA++
Sbjct: 589 AQIDADLRAVTDQIKAMIAEL 609