Pairwise Alignments

Query, 793 a.a., SAM-dependent DNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., type I restriction-modification system, M subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  147 bits (372), Expect = 1e-39
 Identities = 133/493 (26%), Positives = 225/493 (45%), Gaps = 75/493 (15%)

Query: 8   KLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQ---KEE 64
           +L SF+W  AD  LR      +Y+D I  M+ L+RL    E ++E V++    +   KE+
Sbjct: 9   QLESFLWEAAD-ILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVVQYYLGKGKTKEQ 67

Query: 65  MNEIELDDAPLCATSGYVFYNTSKWT-LQTLFSTATNNQQILLANFEDYLNGFSENVKEI 123
              +  D+     T  +    +++W+ L+ L               E+Y N   E V   
Sbjct: 68  AEALAQDEDEYDKT--FFVPKSARWSALKDLKHDIGATLNKATEAIEEY-NSSLEGVLVT 124

Query: 124 VECFNLKAQIRHMAGKDVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEE 183
           ++ FN+K ++     +D+L          + +      ED E   L       +G  +E 
Sbjct: 125 ID-FNIKNKLSDKKLRDLL---------SHFSKYRLRNEDFERPDL-------LGTAYEY 167

Query: 184 LIRKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDNLPLSITVYDPACGSGGMLTETQN 243
           LI+ F +   ++ GE +TP EV+ L+  L+           + +YDP  GSGGML +T+N
Sbjct: 168 LIKMFADSAGKKGGEFYTPSEVVSLLVALL------KPKAGMRIYDPTSGSGGMLVQTRN 221

Query: 244 FVEEKYPASNRDIYLYGKEINDETYAICKSDMMIKGNNPENIRVGSTLSTDEFSSN---- 299
           ++   +  +  ++ L+G+E+N  T+AICK +M + G    +IR G TL   + +      
Sbjct: 222 YL-AAHGENPGNLSLFGQEMNLNTWAICKMNMFLHGVLSADIRKGDTLREPKHTEGGELM 280

Query: 300 RFDFMLSNPPYGKSWASEQKHIKEGKEVVD----GRFKVKLKDYWGVESEQEAIPRSSDG 355
            FD +++NPP+  +        K GK+  D    GRF                 P    G
Sbjct: 281 TFDRVIANPPFSLA--------KWGKDECDNDGFGRFPY-------------GTPPKDAG 319

Query: 356 QLLFLMEMVTKMKSPQDSPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLDAIVQ 415
            L F+  M+    +         +  V     LF    GS E  IR+ I+E+D+L+A++ 
Sbjct: 320 DLAFVQHMIASTNAE------GMVGVVMPHGVLF---RGSSEKAIRQGILEDDLLEAVIG 370

Query: 416 LPNNLFYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPEHIAE 475
           LP+ LFY TGI   + ++N  K   R+GKV  I+  L + +     G    +  P+ I +
Sbjct: 371 LPSGLFYGTGIPACLLIINKRKAAERKGKVLFINGELEYEE-----GKNQNKLRPQDIEK 425

Query: 476 IVSTYLENQSVER 488
           IV+T+   Q+++R
Sbjct: 426 IVTTFNNYQNIKR 438