Pairwise Alignments

Query, 462 a.a., restriction endonuclease subunit S from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Restriction endonuclease S subunits from Pseudomonas stutzeri RCH2

 Score =  100 bits (248), Expect = 1e-25
 Identities = 89/339 (26%), Positives = 166/339 (48%), Gaps = 30/339 (8%)

Query: 139 VTSNFVAKMTPKEWVISGFLKYVFSALYNNGVNYLSIKQTTGI-----QNLDASSYLNEK 193
           + S++V  + P+  ++ G+ + +F +     V+Y+   Q+T       Q+++  +++   
Sbjct: 98  IRSSYVV-LRPRADLVPGYYQRLFKS-----VDYIQTLQSTANFIRDGQDMNYQNFVLID 151

Query: 194 FCIPQKEEQYEIAKFLDNKTTQINEAIAIKQKQIELLKERKQIIIQQAVTQGLNPDATMK 253
             +P   EQ  IA FLD++T +I+  I  +Q+ IELL E++Q +I  AVT+GL+P   MK
Sbjct: 152 LPLPPVSEQLCIAAFLDHETARIDALIEEQQRLIELLMEKRQAVISHAVTKGLDPTVPMK 211

Query: 254 YSGVDWIGAIPGHWIVKRAKYL--------LDEINERSETGLEELLSVSHMTG--VTPRS 303
            SGV+W+G +P HW V              +  ++ R E     L+ +S + G  VT + 
Sbjct: 212 DSGVEWLGKVPAHWSVVPFGLAFGYQEGPGIMAVDFRDEG--VPLVRISGVQGRWVTLQG 269

Query: 304 EKNVTMFMAEDYTGSKLCHSGDLVINIMWAWMGALGVSDRTGIVSPSY-GVFR-EQREGT 361
              +    A    G      GDL+I+   A MG +       + + +Y G+ R   + G 
Sbjct: 270 CNYLDPAKASGKWGHFRLEHGDLIISGS-ASMGLVSEVGEEAVGAVAYTGLIRLTPKTGI 328

Query: 362 FVPKYLEMLLKSTKYVEYYNKVSTGLHSSRLRFYGHM-LFDMALGFPPYEEQTQIVEYIS 420
               ++  ++ S ++    + +  G   S ++ +G   L  M +  PP +EQ ++  Y+ 
Sbjct: 329 SDRDFIRSVVGSYQFFVQIDLLKAG---STIQHFGPTHLSQMKVVLPPLDEQIKLASYVD 385

Query: 421 RECSKVDEAITVQAEQVSKLKEYKTTLINSAVTGKIKVT 459
           +   + D+ +    +    L+E +  LI++AVTGKI V+
Sbjct: 386 KVSVQFDQLLGEAEKTNELLQERRAALISAAVTGKIDVS 424



 Score = 66.2 bits (160), Expect = 2e-15
 Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 10/239 (4%)

Query: 8   LWLRFRGKLMSNTMIKKMPKYESYKDSCEQWIGDIPAHWEVYRLKSAV-YECSNGIWGSD 66
           L +  R  ++S+ + K +      KDS  +W+G +PAHW V     A  Y+   GI   D
Sbjct: 187 LLMEKRQAVISHAVTKGLDPTVPMKDSGVEWLGKVPAHWSVVPFGLAFGYQEGPGIMAVD 246

Query: 67  PNGRDE-IVVLRVADFDDHKLKISDEKLTYRSIPAKEHQGRLLKNGDLLIEKSGGGDKTL 125
              RDE + ++R++      + +        +  + +     L++GDL+I  SG     L
Sbjct: 247 --FRDEGVPLVRISGVQGRWVTLQGCNYLDPAKASGKWGHFRLEHGDLII--SGSASMGL 302

Query: 126 VGRVVLFDKQYPAVTSNFVAKMTPKEWVIS-GFLKYVFSALYNNGVNYLSIKQTTGIQNL 184
           V  V   ++   AV    + ++TPK  +    F++ V  + Y   V    +K  + IQ+ 
Sbjct: 303 VSEVG--EEAVGAVAYTGLIRLTPKTGISDRDFIRSVVGS-YQFFVQIDLLKAGSTIQHF 359

Query: 185 DASSYLNEKFCIPQKEEQYEIAKFLDNKTTQINEAIAIKQKQIELLKERKQIIIQQAVT 243
             +     K  +P  +EQ ++A ++D  + Q ++ +   +K  ELL+ER+  +I  AVT
Sbjct: 360 GPTHLSQMKVVLPPLDEQIKLASYVDKVSVQFDQLLGEAEKTNELLQERRAALISAAVT 418



 Score = 62.8 bits (151), Expect = 2e-14
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 14/204 (6%)

Query: 257 VDWIGAIPGHWIVKRAKYLLDEINERSETGLEELLSVSHMTGVTPRSE------KNVTMF 310
           V W    P  W V  +K L  E  ER+    +E LS +   GV  ++E      + V   
Sbjct: 5   VKWPCKFPDRWTVLPSKRLFPESKERAPES-DEQLSATQEYGVISQAEFMRLAGRRVVQ- 62

Query: 311 MAEDYTGSKLCHSGDLVINIMWAWMGALGVSDRTGIVSPSYGVFREQREGTFVPKYLEML 370
           + ++    K    GD VI+ M ++ G L  +   G +  SY V R + +   VP Y + L
Sbjct: 63  LNQNLELRKRVEIGDFVIS-MRSFQGGLERAWAEGGIRSSYVVLRPRAD--LVPGYYQRL 119

Query: 371 LKSTKYVEYYNKVSTGLHSSR-LRFYGHMLFDMALGFPPYEEQTQIVEYISRECSKVDEA 429
            KS  Y++     +  +   + + +   +L D+ L  PP  EQ  I  ++  E +++D  
Sbjct: 120 FKSVDYIQTLQSTANFIRDGQDMNYQNFVLIDLPL--PPVSEQLCIAAFLDHETARIDAL 177

Query: 430 ITVQAEQVSKLKEYKTTLINSAVT 453
           I  Q   +  L E +  +I+ AVT
Sbjct: 178 IEEQQRLIELLMEKRQAVISHAVT 201