Pairwise Alignments

Query, 462 a.a., restriction endonuclease subunit S from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., type I restriction-modification from Synechococcus elongatus PCC 7942

 Score =  139 bits (349), Expect = 3e-37
 Identities = 117/460 (25%), Positives = 217/460 (47%), Gaps = 37/460 (8%)

Query: 26  PKYESYKDSCEQWIGDIPAHWEVYRLKSAVYECSNGIW-GSDPNGRDEIV--VLRVADF- 81
           P+Y +YKD   +W+  +P+HW V +L+  + E  +G+   +  +  DE +  VL+ +   
Sbjct: 4   PRYPAYKDCGIEWLEKLPSHWNVLQLRRLIPEIESGVSVNALDHAPDEGIPSVLKTSCVY 63

Query: 82  -----DDHKLKISDEKLTYRSIPAKEHQGRLLKNGDLLIEKSGGGDKTLVGRVVLF--DK 134
                 + + +I  E +   + P K   GRL+ +     +  G    +LV    +F  D+
Sbjct: 64  TGSFRPEERKEIIQEDIDRAACPVKS--GRLIVSRMNTPDLVGAAGLSLVDYDYVFLPDR 121

Query: 135 QYPAVTSNFVAKMTPKEWVISGFLKY-VFSALYNNGVNYLSIKQTTGIQNLDASSYLNEK 193
            +    SN          V   F  Y   + +Y + V  +    ++ +QNL   ++L+  
Sbjct: 122 LWQVRISN----------VYPNFAYYWTQTQIYRDQVKMVCSGTSSSMQNLSQDNFLSFI 171

Query: 194 FCIPQKEEQYEIAKFLDNKTTQINEAIAIKQKQIELLKERKQIIIQQAVTQGLNPDATMK 253
             +P  EEQ  IA FLD +T +I+  IA +Q+ I LL+E++Q +I  AVT+GLNPDA +K
Sbjct: 172 LPVPSDEEQIAIASFLDRETAKIDALIAEQQRLIALLQEKRQAVISHAVTKGLNPDAPLK 231

Query: 254 YSGVDWIGAIPGHWIVKRAKYLLDEINERSETGLEELL----SVSHMTGVTPRSEKNVTM 309
            SG++W+G +P HW   + K+     +  +    E+ L    S S +  V     +N  +
Sbjct: 232 DSGIEWLGQVPAHWKTGKIKHYFKTSSGGTPNTEEQALYYADSDSGIPWVRTTDIENQEV 291

Query: 310 FMAE-DYTGSKLCHSGDLVI---NIMWAWMGALGVSDRTGIVSPSYGVFREQREGTFVPK 365
             AE   T   +  +   ++    ++ A  G  G   + GI+  ++     Q     +P 
Sbjct: 292 RSAEVSITNQAIQDTACEILPVDTVLVALYGGGGTVGKNGIL--TFPAAINQALCALLPS 349

Query: 366 YLEMLLKSTKYVEYYNK--VSTGLHSSRL-RFYGHMLFDMALGFPPYEEQTQIVEYISRE 422
           Y  + + + +Y+++     +   + + +       ++ D     PP +EQ  IV++I  +
Sbjct: 350 YYAVPMFTFRYIQFLRPFWMERAVSARKAGNISQELVRDTVFALPPLDEQILIVKHIHSQ 409

Query: 423 CSKVDEAITVQAEQVSKLKEYKTTLINSAVTGKIKVTELA 462
             ++        + +S L+E ++ LI++AVTG+I V  LA
Sbjct: 410 LEEITSLENESTKSLSLLQERRSALISAAVTGQIDVRGLA 449



 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 22/241 (9%)

Query: 13  RGKLMSNTMIKKMPKYESYKDSCEQWIGDIPAHWEVYRLKSAVYECSNGIWGSDPNGRDE 72
           R  ++S+ + K +      KDS  +W+G +PAHW+  ++K      S    G  PN  ++
Sbjct: 212 RQAVISHAVTKGLNPDAPLKDSGIEWLGQVPAHWKTGKIKHYFKTSS----GGTPNTEEQ 267

Query: 73  ----------IVVLRVADFDDHKLKISDEKLTYRSIPAKEHQGRLLKNGDLLIEKSGGGD 122
                     I  +R  D ++ +++ ++  +T ++I  ++    +L    +L+   GGG 
Sbjct: 268 ALYYADSDSGIPWVRTTDIENQEVRSAEVSITNQAI--QDTACEILPVDTVLVALYGGGG 325

Query: 123 KTLVGRVVLFDKQYPAVTSNFVAKMTPKEWVISGFLKYVFSALYNNGVNYLSIKQTTGIQ 182
                 ++ F    PA  +  +  + P  + +  F       L    +      +  G  
Sbjct: 326 TVGKNGILTF----PAAINQALCALLPSYYAVPMFTFRYIQFLRPFWMERAVSARKAG-- 379

Query: 183 NLDASSYLNEKFCIPQKEEQYEIAKFLDNKTTQINEAIAIKQKQIELLKERKQIIIQQAV 242
           N+      +  F +P  +EQ  I K + ++  +I        K + LL+ER+  +I  AV
Sbjct: 380 NISQELVRDTVFALPPLDEQILIVKHIHSQLEEITSLENESTKSLSLLQERRSALISAAV 439

Query: 243 T 243
           T
Sbjct: 440 T 440