Pairwise Alignments

Query, 462 a.a., restriction endonuclease subunit S from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., restriction endonuclease subunit S from Pantoea sp. MT58

 Score = 48.5 bits (114), Expect = 4e-10
 Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 26/222 (11%)

Query: 11  RFRGKLMSNTMIKKMPKYESYKDSCEQWIGDIPAHWEVYRLKSAVYECSNGIWGSDPNGR 70
           RFR  +++  +  K+   E Y+++       +   W+   L + + +  NG+        
Sbjct: 182 RFRQAVLAAAVSGKLT--EDYREN------QVITSWDNTTLGTLIIDSCNGLAKRSGTDG 233

Query: 71  DEIVVLRVADFDD-HKLKISDEKLTYRSIPAKEHQGRLLKNGDLLIEKSGGGDKTLVGRV 129
           ++I +LR+ADF +  ++  ++ K+T   + +KE     LK  D+L+ +   G   L GR 
Sbjct: 234 EDITILRLADFKNAQRIHGNERKIT---LDSKEINKYSLKKSDILVIRV-NGSADLAGRF 289

Query: 130 VLFDKQY--PAVTSNFVAKMTPKEWVISGFLKYVFSALYNNGVNYL--SIKQTTGIQNLD 185
           + + + Y       +F+      E + S FL ++  A    G  YL  S+  + G   ++
Sbjct: 290 IEYKQTYEIEGFCDHFIRLRLNSEKISSRFLTFI--ANEGEGRFYLRNSLSTSAGQNTIN 347

Query: 186 ASSYLNEKFCIPQKEEQYEIAK-------FLDNKTTQINEAI 220
            +S       +P   EQ+EI +       + D    Q+N A+
Sbjct: 348 QTSIKGLALSLPTLPEQHEIVRRVEQLFAYADTIEKQVNNAL 389



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 149 PKEWVISGFLKYVFSALYNNGVNYLSIKQTTGIQNLDASSYLNEKFCIPQKEEQYEIAKF 208
           P+E   S    Y+ S ++   +  LS     G    D S +    F +  ++EQ  IA+ 
Sbjct: 102 PQELERSYIRYYLESEIFQFPLKLLSRSAQNGFNKEDLSRF---DFLLAPRDEQKIIAEK 158

Query: 209 LDNKTTQINEAIAIKQKQIELLKERKQIIIQQAVTQGLNPDATMKYSGVDWIGAIPGHWI 268
           LD    Q++   A  ++  ++LK  +Q ++  AV+  L  D         W     G  I
Sbjct: 159 LDTLLVQVDSTKARLEQIPQILKRFRQAVLAAAVSGKLTEDYRENQVITSWDNTTLGTLI 218

Query: 269 V 269
           +
Sbjct: 219 I 219



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 15/202 (7%)

Query: 261 GAIPGHWIVKRAKYLLDEIN----ERSETGLEELLSVSHMTGVTPRSEKNVTMFMAEDYT 316
           G +P  W++ +   L+D        +SE   EE      +  +    +K V  ++ E   
Sbjct: 4   GKLPEGWVLSKFTDLMDVQGGTQPPKSEFIAEEKEGYIRLLQIRDFGKKPVPTYIPETKK 63

Query: 317 GSKLCHSGDLVINIMWAWMGALGVSDRTGI-VSPSYGVFREQREGTFVPKYLEMLLKSTK 375
             K C   DL+I    A +G +         V+ +  ++ ++ E +++  YLE  +    
Sbjct: 64  -LKTCRKEDLLIGRYGASLGRICTGHEGAYNVALAKVIYPQELERSYIRYYLESEIFQFP 122

Query: 376 YVEYYNKVSTGLHSSRLRFYGHMLFDMALGFPPYEEQTQIVEYISRECSKVDEAITVQAE 435
                     G +   L  +  +L        P +EQ  I E +     +VD     + E
Sbjct: 123 LKLLSRSAQNGFNKEDLSRFDFLL-------APRDEQKIIAEKLDTLLVQVDST-KARLE 174

Query: 436 QVSK-LKEYKTTLINSAVTGKI 456
           Q+ + LK ++  ++ +AV+GK+
Sbjct: 175 QIPQILKRFRQAVLAAAVSGKL 196