Pairwise Alignments

Query, 462 a.a., restriction endonuclease subunit S from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., type I restriction-modification system specificity subunit from Caulobacter crescentus NA1000

 Score =  126 bits (317), Expect = 1e-33
 Identities = 121/458 (26%), Positives = 195/458 (42%), Gaps = 40/458 (8%)

Query: 26  PKYESYKDSCEQWIGDIPAHWEVYRLKSAVYECSNGI--------WGSDPNGRDEIVVLR 77
           P YESYK+S  +W+G +P+HW    LK  V   S G         WG       EI    
Sbjct: 4   PAYESYKESGVEWLGRVPSHWNFRPLKHLVIMRSGGTPSKEREDYWGG------EIPWAS 57

Query: 78  VADFDDHKLKISDEKLTYRSIPAKEHQGRLLKNGDLLIEKSGGGDKTLVGRVVLFDKQYP 137
             D     L  + + LT  ++   E   +LL    +++   G     L     +     P
Sbjct: 58  AKDLKVDTLTDTQDHLTAEALD--EGAAQLLPANAVVVLVRG---MMLARTFPVCRLSRP 112

Query: 138 AVTSNFVAKMTPKEWVISGFLKYVFSALYNNGVNYLSIKQTTGIQNLDASSYLNEKFCIP 197
              +  +  +     V   +L +   A     +  L  +   G + L   ++   +   P
Sbjct: 113 MTINQDLKGLIANRGVDPNYLAWSLRASEVETLCRLD-EAGHGTKALRMDAWSTMELPAP 171

Query: 198 QKEEQYEIAKFLDNKTTQINEAIAIKQKQIELLKERKQIIIQQAVTQGLNPDATMKYSGV 257
              EQ  IA FLD +T +I+  +  +++ I LLKE++Q +I  AVT+GL+P A MK SGV
Sbjct: 172 SLAEQQAIAAFLDRETAKIDALVEAQERLIALLKEKRQAVISHAVTKGLDPSAQMKDSGV 231

Query: 258 DWIGAIPGHWIVKRAKYLLDEINERSETGLEELLSVSHMTGVTPRSEKNVTM--FMAEDY 315
           +W+G +P HW V  AK L D I +    G      +    G     ++ V    F   DY
Sbjct: 232 EWLGQMPAHWEVVPAKNLADSI-KAGPFGSALTKDMYSSAGYRVYGQEQVIPGDFRIGDY 290

Query: 316 ---------TGSKLCHSGDLVINIMWAWMGALGV---SDRTGIVSPSYGVFREQREGTFV 363
                            GDL+++ +  + G + +       GI++P    FR   +    
Sbjct: 291 YVTSDRYNELSQYRVEVGDLLVSCVGTF-GKIAIFPQGAEPGIINPRLIRFRPNNQ--VD 347

Query: 364 PKYLEMLLKSTKYVEYYNKVSTGLHSSRLRFYGHMLFDMALGFPPYEEQTQIVEYISREC 423
           P YL +LL+S    E ++ +S G     +     +L ++ +  PP +EQ  I  Y++   
Sbjct: 348 PTYLCVLLRSAVSFEQFSYLSRGGTMDVINI--GILGEIVVPVPPMQEQISIAGYLAEVQ 405

Query: 424 SKVDEAITVQAEQVSKLKEYKTTLINSAVTGKIKVTEL 461
            + D         ++ L+E +  LI++AVTGKI V  L
Sbjct: 406 EQFDSLSAASEAAITLLQERRAALISAAVTGKIDVRGL 443



 Score = 55.1 bits (131), Expect = 5e-12
 Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 31/245 (12%)

Query: 13  RGKLMSNTMIKKMPKYESYKDSCEQWIGDIPAHWEVYRLKSAVYECSNGIWGSDPN---- 68
           R  ++S+ + K +      KDS  +W+G +PAHWEV   K+       G +GS       
Sbjct: 208 RQAVISHAVTKGLDPSAQMKDSGVEWLGQMPAHWEVVPAKNLADSIKAGPFGSALTKDMY 267

Query: 69  --------GRDEIVVLRVADFDDHKLKISDEKLTYRSIPAKEHQGRLLKNGDLLIEKSGG 120
                   G+++++     DF     +I D  +T  S    E     ++ GDLL+   G 
Sbjct: 268 SSAGYRVYGQEQVI---PGDF-----RIGDYYVT--SDRYNELSQYRVEVGDLLVSCVG- 316

Query: 121 GDKTLVGRVVLFDK-QYPAVTSNFVAKMTPKEWVISGFLKYVF-SALYNNGVNYLSIKQT 178
                 G++ +F +   P + +  + +  P   V   +L  +  SA+     +YLS   T
Sbjct: 317 ----TFGKIAIFPQGAEPGIINPRLIRFRPNNQVDPTYLCVLLRSAVSFEQFSYLSRGGT 372

Query: 179 TGIQNLDASSYLNEKFCIPQKEEQYEIAKFLDNKTTQINEAIAIKQKQIELLKERKQIII 238
             + N+     +     +P  +EQ  IA +L     Q +   A  +  I LL+ER+  +I
Sbjct: 373 MDVINIGILGEI--VVPVPPMQEQISIAGYLAEVQEQFDSLSAASEAAITLLQERRAALI 430

Query: 239 QQAVT 243
             AVT
Sbjct: 431 SAAVT 435