Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1064 a.a., Type III restriction enzyme, res subunit./Type I restriction enzyme R protein N terminus (HSDR_N). from Pseudomonas stutzeri RCH2

 Score =  520 bits (1339), Expect = e-151
 Identities = 386/1058 (36%), Positives = 543/1058 (51%), Gaps = 152/1058 (14%)

Query: 43   YLIGSPSDFDKQYALDTRLFWQFLEDTQASELEKLKRTSPHDWQRKILERFDRMIKRHGV 102
            +L G  S +D++ AL T  F  + +D      +K  + +P++    ++++  R +++ G 
Sbjct: 22   WLTGPASGYDRRTALYTEDFLGYFKDAWPERWDKFAKANPNNPDDVLVQKLVRELEQSGT 81

Query: 103  LRLLKKGLDVDDAFLSLMYPAPLASSSEKVKKDFSANLFSVTRQVCYS-----------N 151
            L +L+ G  +    + L    P    +    K +  N   V  +V YS           +
Sbjct: 82   LDVLRHGFKLPAVKVELCSFQPDHGMNPDTLKRYWCNRLRVVPEVSYSPHAREAGSSGQS 141

Query: 152  ANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRDDRDAN-------QPLLNF 204
             NP   +D+VLF+NGIP  TLELK+ +  + +V + ++QYR DR          +PLL F
Sbjct: 142  YNP--RLDLVLFVNGIPTATLELKSEF--KQSVENAKRQYRYDRPVKDPLTRKPEPLLTF 197

Query: 205  AR-CLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGF-NFGKGNPINPHG--HKTAYLWQEV 260
             R  LVH AV  +EV MTTKL GK+TFFLPFN G    G GNP  P    + T YLWQ++
Sbjct: 198  KRGALVHFAVGQNEVAMTTKLDGKDTFFLPFNLGSAEGGAGNPPPPDDSQYATGYLWQQL 257

Query: 261  FRKESIANIIQHFIRLDGSSKKQLD-----KRTLFFPRYHQMDVVRRLVDHCSVNGVGQT 315
            F+ ++   ++  F+ LD  + +  D     + T+ FPRYHQ DVV +L+      G G+ 
Sbjct: 258  FQPDAWLKVLGRFLHLDKKTSEGFDGSLTTRETMIFPRYHQWDVVNQLIQTTHAEGPGKR 317

Query: 316  YLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLR 375
            YLIQHSAGSGKSNSI W A+QL   Y  SDD  G R     LF SVIVVTDR +LD QL+
Sbjct: 318  YLIQHSAGSGKSNSIAWTAHQLASMY--SDD--GQR-----LFSSVIVVTDRTVLDSQLQ 368

Query: 376  DNIKEFSEVKNIVAPAF-------KSSELKSALENGKKIIITTIQKFPYIVDGIAD---L 425
            + I +F   + +V P         KS +L  AL    +III TIQ FP + D +     L
Sbjct: 369  NTIYQFVHAQGVVRPITRDVGNQSKSEQLAEALAEQTRIIIVTIQTFPALFDALEKYPKL 428

Query: 426  SDRRFAVIIDEAHSSQDGHNQDKLNEAMG--------FVSEDVLDKALQSAKNRKMRSNA 477
            +  R+AVI DEAHSSQ G +  KL + +G          +ED+LD A+Q+   R+     
Sbjct: 429  ASGRYAVIADEAHSSQTGSSASKLKQILGSDALDAEEISAEDLLDAAVQA---RQPNERI 485

Query: 478  SYFAFTATPKNTTLEKFGQRQADGTYVP--------FHLYSMKQAIEEGFILDVIANYTT 529
            SY+AFTATPK  TLE FG R  D T  P        FHLYSM+QAIEEGFILDV+ NYTT
Sbjct: 486  SYYAFTATPKAKTLELFG-RVPDPTLPPSASNRPEAFHLYSMRQAIEEGFILDVLQNYTT 544

Query: 530  YKSYYEIEKSIQDNPEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHF---IKHVVNGKK 586
            Y + ++I     ++ E DSKKA+ +L  +V      ID K EI++EHF   I+H+     
Sbjct: 545  YSTAWKIAHPDGEDDEVDSKKARMKLARWVRLHPYNIDKKVEIIVEHFRGNIRHL----- 599

Query: 587  LKGKGKGMVVTQNIESAIRYYRALTRQLNKMG-NPFKVAIAFSGS---KEVDGIEYTEAD 642
            L G+ K MVVT + + A+RY  A+   + +MG       +AFSGS    EV   E TE+ 
Sbjct: 600  LGGQAKAMVVTSSRQEAVRYQLAVKAYVQQMGYADVHPLVAFSGSVLPDEVIPEEVTESS 659

Query: 643  --IN-GFPEGDTKDYFDVNYKRKEPDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCAMY 699
              +N G    D  D FD                 QD + +++ ANKY TGFDQPKLCAMY
Sbjct: 660  SLLNAGLNGRDLADAFDT----------------QD-FNVMIAANKYQTGFDQPKLCAMY 702

Query: 700  VDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFFNSVDDIKTAFDPFYTSTTLSEAT 759
            VDKKL  V CVQ LSRLNR+ P      +  F+LDFFN   DI  AF P+YT   LS+ T
Sbjct: 703  VDKKLQGVDCVQTLSRLNRTFP-----AKQTFILDFFNEPQDILDAFLPYYTKAELSDVT 757

Query: 760  DVNVLHELKDDMDDTDVYEWFEVEEFNKRFFEGR-EAQDLSPIIDIAAARF--------- 809
            D  ++++L+  +D   +Y W EVE F   FF+ +  A  LS     A  RF         
Sbjct: 758  DPQIIYDLQKKLDAEGIYHWQEVEAFALAFFDPKAAASKLSYYCQPAKERFAKRYAFSVE 817

Query: 810  ------------------------NHELELENEFKVD----FKVKAKQFVKIYGQIASIM 841
                                     H L+   E +VD    F+   + FV++Y  ++ I+
Sbjct: 818  SRQQALDYKRTAEANGDSAGLKKAEHALKEAGE-QVDQLDLFRKNLQSFVRLYEFLSQIV 876

Query: 842  PYEVVQWEKLFWFLKFLIPKLSVEDPDKEALDSLLDSVDLSSYGLQRVKLNHSIELDDSE 901
            PYE  + E+L  F K L P L V+   ++ +D  +  + L+ Y L + +  H + L +  
Sbjct: 877  PYEDRELEQLCVFAKHLHPLLRVDRLQQDDVD--VGELQLTHYRLSK-RAEHQLRLSEEG 933

Query: 902  TELDPQNPNPRGAYGP-EAEKDPLDEIIKIFNERWFQGWSATPEEQRVKFVNIAESIRNH 960
             E   +  +  G+  P + EK  L EII   N+ +  G   + E+Q      IAE I   
Sbjct: 934  GEYTLKPGSDVGSGKPHDPEKKRLSEIIDALNDIF--GAEVSDEDQLHFLTGIAERISRQ 991

Query: 961  PDFEAKYQNNADPHTRELAFEKMLKEIMLQRRKDELEL 998
             D  A+  N++          K + + +L    D+ +L
Sbjct: 992  EDVMAQVNNHSVDQVMHGLLPKRVIDTVLDAMTDQEKL 1029